Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   E3U39_RS16130 Genome accession   NZ_CP038028
Coordinates   3230050..3230745 (+) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3225050..3235745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS16110 (E3U39_16110) - 3225996..3227288 (+) 1293 WP_053573156.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  E3U39_RS16115 (E3U39_16115) comC 3227428..3228180 (+) 753 WP_015417928.1 A24 family peptidase Machinery gene
  E3U39_RS16120 (E3U39_16120) - 3228307..3229308 (+) 1002 WP_015417927.1 SPOR domain-containing protein -
  E3U39_RS16125 (E3U39_16125) - 3229449..3230018 (+) 570 WP_015417926.1 Maf family protein -
  E3U39_RS16130 (E3U39_16130) ysxA/radC 3230050..3230745 (+) 696 WP_007408165.1 DNA repair protein RadC Machinery gene
  E3U39_RS16135 (E3U39_16135) mreB 3230837..3231850 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  E3U39_RS16140 (E3U39_16140) mreC 3231881..3232744 (+) 864 WP_007408166.1 rod shape-determining protein MreC -
  E3U39_RS16145 (E3U39_16145) mreD 3232741..3233259 (+) 519 WP_003152650.1 rod shape-determining protein MreD -
  E3U39_RS16150 (E3U39_16150) minC 3233313..3233993 (+) 681 WP_003152653.1 septum site-determining protein MinC -
  E3U39_RS16155 (E3U39_16155) minD 3233996..3234799 (+) 804 WP_003152655.1 septum site-determining protein MinD -
  E3U39_RS16160 (E3U39_16160) - 3234927..3235730 (+) 804 WP_017418246.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=309490 E3U39_RS16130 WP_007408165.1 3230050..3230745(+) (ysxA/radC) [Bacillus amyloliquefaciens strain FS1092]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=309490 E3U39_RS16130 WP_007408165.1 3230050..3230745(+) (ysxA/radC) [Bacillus amyloliquefaciens strain FS1092]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment