Detailed information NTG0309345

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: E3I93_RS08765
• Genome accession: NZ_CP038021
• Coordinates: 1748464..1749150 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692881.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 04-002
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1743464..1754150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3I93_RS08720 (E3I93_08720)	rpmA	1744178..1744462 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
E3I93_RS08725 (E3I93_08725)	-	1744474..1744794 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
E3I93_RS08730 (E3I93_08730)	rplU	1744800..1745108 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
E3I93_RS08735 (E3I93_08735)	mreD	1745401..1745931 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
E3I93_RS08740 (E3I93_08740)	mreC	1745931..1746773 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
E3I93_RS08745 (E3I93_08745)	-	1746973..1747092 (-)	120	WP_000840603.1	hypothetical protein	-
E3I93_RS08750 (E3I93_08750)	-	1747166..1747639 (-)	474	WP_001236733.1	DUF4930 family protein	-
E3I93_RS08755 (E3I93_08755)	-	1747799..1747996 (+)	198	WP_000025835.1	hypothetical protein	-
E3I93_RS08760 (E3I93_08760)	-	1748112..1748396 (-)	285	WP_000171861.1	hypothetical protein	-
E3I93_RS08765 (E3I93_08765)	ysxA/radC	1748464..1749150 (-)	687	WP_000692881.1	DNA repair protein RadC	Machinery gene
E3I93_RS08770 (E3I93_08770)	-	1749147..1749854 (-)	708	WP_134521551.1	A24 family peptidase	-
E3I93_RS08780 (E3I93_08780)	-	1750115..1751386 (-)	1272	WP_001108339.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
E3I93_RS08785 (E3I93_08785)	-	1751399..1754029 (-)	2631	WP_134521553.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25345.25 Da
• Isoelectric Point: 6.7572

>NTDB_id=309345 E3I93_RS08765 WP_000692881.1 1748464..1749150(-) (ysxA/radC) [Staphylococcus aureus strain 04-002]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREFFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=309345 E3I93_RS08765 WP_000692881.1 1748464..1749150(-) (ysxA/radC) [Staphylococcus aureus strain 04-002]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAATTTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus gordonii str. Challis substr. CH1	39.45	95.614	0.377
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373