Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   E3C75_RS04125 Genome accession   NZ_CP038020
Coordinates   776724..777386 (+) Length   220 a.a.
NCBI ID   WP_100262556.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 771724..782386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS04100 - 772041..772751 (+) 711 WP_014607989.1 ABC transporter ATP-binding protein -
  E3C75_RS04105 - 772887..773549 (+) 663 Protein_768 CBS and ACT domain-containing protein -
  E3C75_RS04110 cysK 773715..774641 (-) 927 WP_014621180.1 cysteine synthase A -
  E3C75_RS04115 - 774743..775369 (-) 627 WP_011680769.1 YigZ family protein -
  E3C75_RS04120 comFA/cflA 775424..776743 (+) 1320 WP_084828509.1 DEAD/DEAH box helicase Machinery gene
  E3C75_RS04125 comFC/cflB 776724..777386 (+) 663 WP_100262556.1 ComF family protein Machinery gene
  E3C75_RS04130 raiA 777465..778013 (+) 549 WP_084828511.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26080.41 Da        Isoelectric Point: 8.9833

>NTDB_id=309223 E3C75_RS04125 WP_100262556.1 776724..777386(+) (comFC/cflB) [Streptococcus thermophilus strain ATCC 19258]
MKCLLCNEWIEPVDQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDNLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=309223 E3C75_RS04125 WP_100262556.1 776724..777386(+) (comFC/cflB) [Streptococcus thermophilus strain ATCC 19258]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGATCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATAATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441

Multiple sequence alignment