Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EKI57_RS18820 Genome accession   NZ_CP037943
Coordinates   3652453..3652989 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain CFSAN027343     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3647453..3657989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI57_RS18800 (EKI57_18800) aphA 3647742..3648455 (+) 714 WP_001375558.1 acid phosphatase AphA -
  EKI57_RS18805 (EKI57_18805) yjbQ 3648566..3648982 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EKI57_RS18810 (EKI57_18810) yjbR 3648986..3649342 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EKI57_RS18815 (EKI57_18815) uvrA 3649377..3652199 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EKI57_RS18820 (EKI57_18820) ssb 3652453..3652989 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EKI57_RS18825 (EKI57_18825) yjcB 3653088..3653369 (-) 282 WP_001341690.1 YjcB family protein -
  EKI57_RS18830 (EKI57_18830) pdeC 3653799..3655385 (+) 1587 WP_000019526.1 c-di-GMP phosphodiesterase PdeC -
  EKI57_RS18835 (EKI57_18835) soxS 3655388..3655711 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EKI57_RS18840 (EKI57_18840) soxR 3655797..3656261 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=309066 EKI57_RS18820 WP_000168305.1 3652453..3652989(+) (ssb) [Escherichia coli strain CFSAN027343]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=309066 EKI57_RS18820 WP_000168305.1 3652453..3652989(+) (ssb) [Escherichia coli strain CFSAN027343]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489