Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DZN94_RS01805 Genome accession   NZ_CP031633
Coordinates   335577..336068 (+) Length   163 a.a.
NCBI ID   WP_002983122.1    Uniprot ID   A0A9X8XIP7
Organism   Streptococcus pyogenes strain MGAS11115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 335265..343704 335577..336068 within 0


Gene organization within MGE regions


Location: 335265..343704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZN94_RS01800 (DZN94_01800) rpsF 335265..335555 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  DZN94_RS01805 (DZN94_01805) ssb 335577..336068 (+) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  DZN94_RS01810 (DZN94_01810) rpsR 336233..336472 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  DZN94_RS01815 (DZN94_01815) - 336605..337261 (-) 657 WP_011285125.1 DUF1129 domain-containing protein -
  DZN94_RS01820 (DZN94_01820) - 337394..338338 (-) 945 WP_002983147.1 magnesium transporter CorA family protein -
  DZN94_RS01825 (DZN94_01825) uvrA 338541..341369 (+) 2829 WP_021340890.1 excinuclease ABC subunit UvrA -
  DZN94_RS01830 (DZN94_01830) - 341485..342558 (+) 1074 WP_021340906.1 Xaa-Pro peptidase family protein -
  DZN94_RS01835 (DZN94_01835) - 342592..343059 (+) 468 WP_003059460.1 deaminase -
  DZN94_RS01840 (DZN94_01840) efp 343147..343704 (+) 558 WP_002993230.1 elongation factor P -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=308837 DZN94_RS01805 WP_002983122.1 335577..336068(+) (ssb) [Streptococcus pyogenes strain MGAS11115]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=308837 DZN94_RS01805 WP_002983122.1 335577..336068(+) (ssb) [Streptococcus pyogenes strain MGAS11115]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment