Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKAES1M_RS25500 Genome accession   NZ_CP037925
Coordinates   5331415..5331912 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain AES1M     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5326415..5336912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKAES1M_RS25480 (CKAES1M_04986) pchD 5327199..5328842 (+) 1644 WP_034042638.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  CKAES1M_RS25485 (CKAES1M_04987) pchC 5328839..5329594 (+) 756 WP_034042635.1 pyochelin biosynthesis editing thioesterase PchC -
  CKAES1M_RS25490 (CKAES1M_04988) pchB 5329594..5329899 (+) 306 WP_010793476.1 isochorismate lyase PchB -
  CKAES1M_RS25495 (CKAES1M_04989) pchA 5329896..5331326 (+) 1431 WP_003118152.1 isochorismate synthase PchA -
  CKAES1M_RS25500 (CKAES1M_04990) ssb 5331415..5331912 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  CKAES1M_RS25505 (CKAES1M_04991) - 5331929..5333317 (-) 1389 WP_003103910.1 MFS transporter -
  CKAES1M_RS25510 (CKAES1M_04992) uvrA 5333531..5336368 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  CKAES1M_RS25515 (CKAES1M_04993) bfr 5336440..5336904 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=308798 CKAES1M_RS25500 WP_003114685.1 5331415..5331912(-) (ssb) [Pseudomonas aeruginosa strain AES1M]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=308798 CKAES1M_RS25500 WP_003114685.1 5331415..5331912(-) (ssb) [Pseudomonas aeruginosa strain AES1M]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515

Multiple sequence alignment