Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E1J55_RS08875 Genome accession   NZ_CP037903
Coordinates   1863716..1864192 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain LHM10-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1858716..1869192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J55_RS08825 sbmC 1859209..1859682 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  E1J55_RS08830 yeeA 1859880..1860938 (+) 1059 WP_001200905.1 FUSC family protein -
  E1J55_RS08835 tmaR 1861110..1861439 (+) 330 WP_000450409.1 DUF496 family protein -
  E1J55_RS08840 - 1861540..1861722 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  E1J55_RS08845 - 1861776..1861865 (+) 90 Protein_1732 transposase domain-containing protein -
  E1J55_RS08850 - 1862211..1862291 (-) 81 Protein_1733 hypothetical protein -
  E1J55_RS08855 yeeW 1862337..1862531 (-) 195 WP_000988600.1 DUF5983 family protein -
  E1J55_RS08860 cbtA 1862528..1862901 (-) 374 Protein_1735 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  E1J55_RS08865 cbeA 1862990..1863358 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  E1J55_RS08870 yeeT 1863432..1863653 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  E1J55_RS08875 radC 1863716..1864192 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  E1J55_RS08880 - 1864208..1864687 (-) 480 WP_136698251.1 antirestriction protein -
  E1J55_RS08885 - 1864769..1865590 (-) 822 WP_136698252.1 DUF932 domain-containing protein -
  E1J55_RS08895 - 1865811..1866221 (-) 411 WP_000846713.1 hypothetical protein -
  E1J55_RS08900 - 1866237..1866921 (-) 685 Protein_1742 hypothetical protein -
  E1J55_RS08905 - 1867057..1867497 (-) 441 Protein_1743 hypothetical protein -
  E1J55_RS25700 - 1868757..1868896 (-) 140 Protein_1745 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=308596 E1J55_RS08875 WP_001186773.1 1863716..1864192(-) (radC) [Escherichia coli strain LHM10-1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=308596 E1J55_RS08875 WP_001186773.1 1863716..1864192(-) (radC) [Escherichia coli strain LHM10-1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment