Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EZV63_RS25955 Genome accession   NZ_CP036534
Coordinates   5785312..5786931 (+) Length   539 a.a.
NCBI ID   WP_037768273.1    Uniprot ID   -
Organism   Streptomyces sp. VN1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5780312..5791931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV63_RS25925 (EZV63_26295) lepB 5781072..5782133 (+) 1062 Protein_5060 signal peptidase I -
  EZV63_RS25930 (EZV63_26300) lepB 5782045..5783043 (+) 999 WP_228773798.1 signal peptidase I -
  EZV63_RS25935 (EZV63_26305) lepB 5783153..5783929 (+) 777 WP_166624995.1 signal peptidase I -
  EZV63_RS25940 (EZV63_26310) - 5783919..5784443 (+) 525 WP_037768277.1 NUDIX hydrolase -
  EZV63_RS25945 (EZV63_26315) - 5784500..5784808 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  EZV63_RS25950 (EZV63_26320) - 5784950..5785312 (+) 363 WP_037768275.1 YraN family protein -
  EZV63_RS25955 (EZV63_26325) comM 5785312..5786931 (+) 1620 WP_037768273.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EZV63_RS25960 (EZV63_26330) dprA 5787096..5788226 (+) 1131 WP_031034022.1 DNA-processing protein DprA -
  EZV63_RS25965 (EZV63_26335) whiG 5788508..5789350 (+) 843 WP_037768268.1 RNA polymerase sigma factor WhiG -
  EZV63_RS25970 (EZV63_26340) - 5789479..5790036 (+) 558 WP_031034018.1 TetR/AcrR family transcriptional regulator -
  EZV63_RS25975 (EZV63_26345) - 5790065..5790715 (-) 651 WP_166626087.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 539 a.a.        Molecular weight: 56338.58 Da        Isoelectric Point: 6.7177

>NTDB_id=308377 EZV63_RS25955 WP_037768273.1 5785312..5786931(+) (comM) [Streptomyces sp. VN1]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDMAVAAAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAAEAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLADEPVPEEAQDEPGRPDPLLAGLRMPGTGAATGMYGMGAAQHEHDLADVVGQESARTAVEVAAAGGHHLFLE
GPPGAGKTMLAERLPAILPRLCRAESLEVTAVHSVAGLLPPGRPLIDVAPYCAPHHSATMQALVGGGAGFARPGAVSLAH
RGVLFLDETPEFSSHALDALRQPLESGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQKEDLCECPPSAIRRYQGRVS
GPLLDRVDLRVEVERVTRSQLTGTGSRGDATTVVADRVRAARERAATRLTGTPWRSNSEVPGRELRSRWYAAPGALEDAE
RSLERGVLTARGLDRVLRVAWTVADLVGHDRPDGTDVALALQLRTGVPRGVPMALGASR

Nucleotide


Download         Length: 1620 bp        

>NTDB_id=308377 EZV63_RS25955 WP_037768273.1 5785312..5786931(+) (comM) [Streptomyces sp. VN1]
ATGGGATTCGCGCGTACGTGCTCCGTGGCGCTCGTCGGCGTCGAGGGCGTGGTCGTCGAGGTCCAGGCCGACCTGGAACC
GGGCGTGGCGGCGTTCACGTTGGTCGGGCTGCCCGACAAGAGCCTCACCGAGAGCCGGGACCGGGTGCGGGCCGCGGTGG
TGAACTCGGGCGCCGAGTGGCCGCAGAAGAAACTGACGGTGGGACTCAGCCCGGCCTCCGTGCCCAAGAGCGGCAGCGGC
TTCGACATGGCCGTCGCGGCGGCCGTCCTCGGGGCCGCCGAGCGGATCGACCCGCGCGTTCTCGCCGACATCGTGATGAT
CGGAGAGCTGGGCCTGGACGGCCGGGTGCGGCCGGTGCGCGGCATCCTCCCCGCGGTCCTGGCCGCGGCCGAGGCCGGTT
ACGAGCAGGTGGTCGTGCCCGAGTGCGCCGCCGCCGAGGCGTCGCTGGTGCCCGGAGTGTCCGTGCTCGGTGTGCGCAGC
CTGCGCCAGCTGATCGCCGTCCTCGCCGACGAACCGGTGCCGGAGGAGGCACAGGACGAGCCGGGCCGGCCCGATCCCCT
CCTGGCCGGTCTGCGCATGCCCGGCACCGGCGCCGCCACCGGGATGTACGGCATGGGCGCGGCGCAGCACGAGCACGACC
TCGCCGACGTCGTGGGCCAGGAGTCGGCGCGCACGGCGGTGGAGGTCGCCGCGGCCGGAGGCCACCACCTCTTCCTGGAG
GGCCCGCCCGGCGCCGGAAAGACCATGCTCGCCGAACGGCTGCCGGCCATCCTGCCCCGGCTCTGCCGCGCGGAGTCCCT
GGAGGTGACCGCCGTGCACTCGGTGGCCGGCCTGCTTCCGCCGGGCAGGCCCCTGATCGACGTGGCCCCGTACTGCGCAC
CGCACCACTCCGCCACCATGCAGGCCCTCGTCGGAGGCGGCGCCGGCTTCGCGCGGCCCGGAGCCGTCTCGCTGGCCCAC
CGCGGTGTCCTGTTCTTGGACGAGACGCCGGAATTCAGCAGCCACGCGCTCGACGCCCTGCGCCAGCCCCTGGAATCCGG
TCACGTCGTCATCGCGCGCAGCGCGGGCGTGGTGCGCTTCCCCGCCCGGTTCCTCATGGTGCTCGCGGCCAATCCCTGCC
CGTGCGGACGGTTCTCCCAGAAGGAGGACCTGTGCGAATGCCCGCCCTCGGCGATCCGCCGGTACCAGGGCAGGGTCTCC
GGACCGCTGCTCGACCGGGTCGACCTCCGGGTCGAGGTGGAACGGGTCACCCGCAGCCAGCTCACCGGCACCGGCAGCAG
GGGCGACGCCACCACGGTCGTCGCCGACCGGGTGCGGGCGGCCCGGGAGCGGGCCGCCACGCGCCTCACGGGCACCCCCT
GGCGGTCCAACAGCGAGGTGCCCGGCCGGGAGCTGCGCAGCCGCTGGTATGCCGCCCCGGGCGCCCTGGAAGACGCGGAA
CGCAGTCTGGAGCGGGGCGTGCTCACCGCCCGAGGCCTCGACCGGGTCCTGCGCGTCGCCTGGACCGTCGCCGACCTCGT
CGGCCACGACCGGCCGGACGGCACGGACGTGGCGCTGGCCCTGCAGCTGCGCACCGGAGTGCCGAGGGGCGTGCCGATGG
CTCTCGGAGCGTCCCGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-524)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.313

97.217

0.382
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.37

94.249

0.371
  comM Vibrio cholerae strain A1552

39.37

94.249

0.371
  comM Haemophilus influenzae Rd KW20

36.94

99.443

0.367
  comM Acinetobacter baylyi ADP1

38.583

94.249

0.364
  comM Legionella pneumophila str. Paris

38.16

94.805

0.362
  comM Legionella pneumophila strain ERS1305867

38.16

94.805

0.362

Multiple sequence alignment