Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | NT05HA_RS06200 | Genome accession | NC_012913 |
| Coordinates | 1363707..1364711 (-) | Length | 334 a.a. |
| NCBI ID | WP_005701144.1 | Uniprot ID | - |
| Organism | Aggregatibacter aphrophilus NJ8700 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1358707..1369711
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NT05HA_RS06175 (NT05HA_1348) | ybgC | 1359233..1359637 (-) | 405 | WP_005701135.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| NT05HA_RS06180 | ybgE | 1359754..1360041 (-) | 288 | WP_005701136.1 | cyd operon protein YbgE | - |
| NT05HA_RS11315 | - | 1360046..1360144 (-) | 99 | WP_005701137.1 | CydX/CbdX family cytochrome bd oxidase small subunit | - |
| NT05HA_RS06185 (NT05HA_1349) | cydB | 1360154..1361290 (-) | 1137 | WP_005701138.1 | cytochrome d ubiquinol oxidase subunit II | - |
| NT05HA_RS06190 (NT05HA_1350) | - | 1361305..1362870 (-) | 1566 | WP_005703793.1 | cytochrome ubiquinol oxidase subunit I | - |
| NT05HA_RS06195 (NT05HA_1351) | - | 1363377..1363652 (+) | 276 | WP_012771681.1 | DUF5339 domain-containing protein | - |
| NT05HA_RS06200 (NT05HA_1352) | ruvB | 1363707..1364711 (-) | 1005 | WP_005701144.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| NT05HA_RS06205 (NT05HA_1353) | ruvA | 1364727..1365341 (-) | 615 | WP_005701145.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| NT05HA_RS06210 (NT05HA_1354) | ruvC | 1365406..1365978 (-) | 573 | WP_005701148.1 | crossover junction endodeoxyribonuclease RuvC | - |
| NT05HA_RS06215 (NT05HA_1355) | - | 1366037..1366450 (-) | 414 | WP_005701150.1 | hypothetical protein | - |
| NT05HA_RS06220 (NT05HA_1356) | - | 1366462..1367202 (-) | 741 | WP_005701152.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| NT05HA_RS06225 (NT05HA_1357) | nudB | 1367278..1367712 (-) | 435 | WP_005701153.1 | dihydroneopterin triphosphate diphosphatase | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 36885.57 Da Isoelectric Point: 4.9250
>NTDB_id=30829 NT05HA_RS06200 WP_005701144.1 1363707..1364711(-) (ruvB) [Aggregatibacter aphrophilus NJ8700]
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKIDVAAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MITEAIAKAALAMLDIDDAGFDYLDRKLLMAVLERFDGGPVGLDNLAAAIGEERDTIEDVVEPYLIQQGFLQRTPRGRIA
TLTTYRHFGVEKIT
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKIDVAAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MITEAIAKAALAMLDIDDAGFDYLDRKLLMAVLERFDGGPVGLDNLAAAIGEERDTIEDVVEPYLIQQGFLQRTPRGRIA
TLTTYRHFGVEKIT
Nucleotide
Download Length: 1005 bp
>NTDB_id=30829 NT05HA_RS06200 WP_005701144.1 1363707..1364711(-) (ruvB) [Aggregatibacter aphrophilus NJ8700]
ATGATTGAAGCAGATAGAATTATCAGTGCCACCGCGAAATTAGATGAAGATGTCATTGATCGTGCCATTCGTCCAAAATT
GTTGGCAGATTATGTGGGACAGCCACAAGTTTGTGAGCAAATGGAAATTTTTATTAAAGCGGCTAAATTACGCCAAGACG
CTCTAGATCATTTATTAATTTTTGGGCCGCCAGGGCTCGGAAAAACCACATTAGCCAATATTGTCGCCAATGAAATGGGG
GTCAATATTCGTACAACCTCAGGCCCGGTATTGGAAAAGGCGGGTGACTTAGCAGCAATGTTAACAAATCTTGAGCCACA
TGATGTGTTATTTATTGATGAAATTCATCGTCTTTCACCGGCGATCGAAGAGGTTCTTTATCCTGCTATGGAAGACTATC
AATTGGACATTATGATTGGTGAAGGTCCAGCAGCCCGTTCGATTAAGCTAGATTTGCCACCGTTTACATTAATCGGTGCA
ACAACCCGCGCAGGTTCTTTAACATCGCCGCTACGTGATCGTTTTGGTATTGTGCAGCGTTTAGAGTTTTATTCTGTGTC
GGATTTAACCTCAATTGTGTCTAGAAGTGCGGTCTGTTTACAGCTTAAAATTGATGTCGCCGCTGCTTACGAAATTGCCC
GCCGCTCTCGCGGTACGCCGCGTATTGCTAATCGGTTACTACGCCGCGTGCGAGATTATGCTGATGTACGTAACAATGGC
ATGATTACAGAAGCAATTGCCAAAGCGGCATTAGCAATGTTGGATATTGATGACGCAGGGTTTGATTATTTGGATAGAAA
ATTATTGATGGCTGTGTTAGAGCGCTTTGATGGTGGGCCGGTTGGGTTGGATAACTTGGCTGCAGCGATTGGTGAAGAGA
GAGATACTATTGAAGATGTGGTCGAGCCTTATTTAATTCAGCAAGGCTTTTTGCAACGAACACCAAGAGGGCGAATTGCG
ACACTAACAACATATCGCCATTTTGGTGTTGAAAAGATTACATGA
ATGATTGAAGCAGATAGAATTATCAGTGCCACCGCGAAATTAGATGAAGATGTCATTGATCGTGCCATTCGTCCAAAATT
GTTGGCAGATTATGTGGGACAGCCACAAGTTTGTGAGCAAATGGAAATTTTTATTAAAGCGGCTAAATTACGCCAAGACG
CTCTAGATCATTTATTAATTTTTGGGCCGCCAGGGCTCGGAAAAACCACATTAGCCAATATTGTCGCCAATGAAATGGGG
GTCAATATTCGTACAACCTCAGGCCCGGTATTGGAAAAGGCGGGTGACTTAGCAGCAATGTTAACAAATCTTGAGCCACA
TGATGTGTTATTTATTGATGAAATTCATCGTCTTTCACCGGCGATCGAAGAGGTTCTTTATCCTGCTATGGAAGACTATC
AATTGGACATTATGATTGGTGAAGGTCCAGCAGCCCGTTCGATTAAGCTAGATTTGCCACCGTTTACATTAATCGGTGCA
ACAACCCGCGCAGGTTCTTTAACATCGCCGCTACGTGATCGTTTTGGTATTGTGCAGCGTTTAGAGTTTTATTCTGTGTC
GGATTTAACCTCAATTGTGTCTAGAAGTGCGGTCTGTTTACAGCTTAAAATTGATGTCGCCGCTGCTTACGAAATTGCCC
GCCGCTCTCGCGGTACGCCGCGTATTGCTAATCGGTTACTACGCCGCGTGCGAGATTATGCTGATGTACGTAACAATGGC
ATGATTACAGAAGCAATTGCCAAAGCGGCATTAGCAATGTTGGATATTGATGACGCAGGGTTTGATTATTTGGATAGAAA
ATTATTGATGGCTGTGTTAGAGCGCTTTGATGGTGGGCCGGTTGGGTTGGATAACTTGGCTGCAGCGATTGGTGAAGAGA
GAGATACTATTGAAGATGTGGTCGAGCCTTATTTAATTCAGCAAGGCTTTTTGCAACGAACACCAAGAGGGCGAATTGCG
ACACTAACAACATATCGCCATTTTGGTGTTGAAAAGATTACATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
62.997 |
97.904 |
0.617 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.282 |
97.605 |
0.569 |
| ruvB | Streptococcus pneumoniae R6 |
58.282 |
97.605 |
0.569 |
| ruvB | Streptococcus pneumoniae D39 |
58.282 |
97.605 |
0.569 |
| ruvB | Helicobacter pylori 26695 |
56.579 |
91.018 |
0.515 |
| ruvB | Synechocystis sp. PCC 6803 |
54.693 |
92.515 |
0.506 |