Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AB849_RS05795 Genome accession   NZ_CP036487
Coordinates   1119245..1121224 (+) Length   659 a.a.
NCBI ID   WP_037997783.1    Uniprot ID   A0ABS0QG24
Organism   Thermoactinomyces vulgaris strain CDF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114245..1126224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS05780 (AB849_005780) - 1115237..1116319 (+) 1083 WP_049720671.1 murein hydrolase activator EnvC family protein -
  AB849_RS05785 (AB849_005785) - 1116445..1117896 (+) 1452 WP_049720670.1 S41 family peptidase -
  AB849_RS05790 (AB849_005790) - 1117975..1119093 (+) 1119 WP_037997781.1 PDZ domain-containing protein -
  AB849_RS05795 (AB849_005795) uvrB 1119245..1121224 (+) 1980 WP_037997783.1 excinuclease ABC subunit UvrB Machinery gene
  AB849_RS05800 (AB849_005800) uvrA 1121228..1124107 (+) 2880 WP_037997785.1 excinuclease ABC subunit UvrA Machinery gene
  AB849_RS05805 (AB849_005805) - 1124191..1124400 (+) 210 WP_037997788.1 alpha/beta-type small acid-soluble spore protein -
  AB849_RS05810 (AB849_005810) - 1124420..1124650 (-) 231 WP_037993289.1 DUF2553 family protein -
  AB849_RS05815 (AB849_005815) - 1124945..1125355 (+) 411 WP_049720669.1 DUF302 domain-containing protein -
  AB849_RS05820 (AB849_005820) - 1125568..1125903 (+) 336 WP_037993291.1 phage holin family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 75732.67 Da        Isoelectric Point: 5.8221

>NTDB_id=307904 AB849_RS05795 WP_037997783.1 1119245..1121224(+) (uvrB) [Thermoactinomyces vulgaris strain CDF]
MGKQFQLVSDFEPRGDQPQAIEKLVRQIQAGNKYQTLLGATGTGKTFTMAQTIARVNKPTLVIAHNKTLAAQLCGELKEF
FPHNAVEYFVSYYDYYQPEAYIPATDTYIEKDASINDEIDKLRHSATSALFEREDVIIVSSVSCIYGLGSPTEYRDLVLS
LRVGMERDRNEVLRKLVDIQYERNDINFVRGTFRVRGDVVEIFPASRSEQAVRVEFFGDEIDRIREIDVVTGEIIGEREH
VAIFPASHYVTRSDVMERALKGIEQELDERLKELREQGKLLEAQRLEQRTRYDLEMMREVGFCSGIENYSRHLVGKKPGE
PPYTLLDFFPKDFLIIVDESHVTIPQIHGMYNGDQARKEMLVEHGFRLPSAKDNRPLRFSEFEEKINQILFVSATPGPYE
LEKSPEVVEQIIRPTGLLDPKIHIHPIKGQIDHLIGLIHDRIEQDERVLVTTLTKKMAEDLTDYLKEMGIKVRYLHSDIK
TIERMKILRDLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAHGEVVMYADKITDSM
KKAIDETERRRQIQAAYNKKHGIVPQTIQKDVREVIEATKVAEQTAEYVTGKQTKKMSKSERNKLIRDLEKEMKEAAKEL
NFERAAELRDLIIELKAEV

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=307904 AB849_RS05795 WP_037997783.1 1119245..1121224(+) (uvrB) [Thermoactinomyces vulgaris strain CDF]
ATGGGAAAACAATTCCAACTGGTGTCGGATTTTGAGCCGCGTGGGGATCAACCGCAGGCGATTGAGAAACTGGTCCGCCA
AATTCAGGCGGGCAACAAGTACCAAACCCTTTTGGGAGCCACGGGGACGGGGAAAACGTTTACCATGGCCCAAACGATTG
CCCGGGTCAACAAACCCACGCTGGTGATTGCGCACAACAAGACGTTGGCGGCGCAGTTGTGCGGGGAGTTGAAGGAATTC
TTCCCCCATAATGCCGTCGAATATTTTGTCAGTTATTATGATTATTATCAACCTGAAGCTTATATTCCGGCAACGGATAC
TTATATAGAAAAAGATGCGTCCATCAATGATGAAATTGACAAGTTGCGCCACTCGGCAACCAGCGCTCTGTTTGAGCGGG
AAGATGTGATTATTGTTTCGAGTGTTTCTTGTATTTACGGCTTGGGTTCACCGACGGAATACCGGGATCTGGTTCTTTCC
TTGCGAGTGGGAATGGAAAGGGACCGGAACGAAGTGTTGCGTAAGTTGGTGGATATCCAATATGAACGAAACGATATCAA
TTTTGTGCGCGGAACGTTCCGGGTGCGGGGCGATGTGGTGGAGATTTTCCCTGCTTCCCGGAGTGAACAAGCGGTCCGGG
TGGAGTTTTTTGGGGATGAGATTGACCGGATTCGCGAAATTGATGTCGTGACGGGAGAAATTATCGGGGAAAGGGAACAT
GTTGCCATCTTCCCGGCTTCTCACTATGTCACCCGTTCCGATGTGATGGAAAGGGCTTTGAAAGGGATTGAACAGGAGCT
GGATGAACGGCTCAAGGAACTGAGGGAACAAGGCAAACTGCTGGAAGCACAACGCTTGGAGCAAAGGACGAGATATGATT
TGGAAATGATGCGGGAAGTCGGATTTTGTTCCGGGATCGAGAACTATTCCCGCCACCTGGTCGGCAAAAAGCCGGGAGAA
CCGCCTTACACCTTGTTGGACTTTTTCCCGAAAGACTTCTTGATCATAGTGGATGAGTCCCATGTCACCATTCCGCAAAT
TCACGGGATGTACAACGGGGATCAGGCGCGAAAGGAGATGTTGGTGGAGCACGGTTTCCGGCTTCCGTCGGCCAAAGACA
ACCGGCCGCTCAGATTTAGCGAGTTTGAAGAAAAGATTAATCAGATCTTATTTGTTTCCGCGACACCGGGTCCGTATGAA
TTGGAGAAATCGCCGGAAGTGGTGGAACAGATTATCCGCCCGACAGGGTTGTTGGATCCGAAAATCCATATCCATCCGAT
CAAGGGGCAAATTGACCACCTGATCGGGCTGATTCATGACCGCATTGAACAGGATGAACGCGTGCTGGTGACGACCCTGA
CGAAAAAAATGGCGGAGGATTTGACGGATTATCTGAAAGAAATGGGGATCAAAGTCCGCTATTTGCATTCGGATATCAAA
ACCATTGAACGGATGAAAATCTTACGCGATCTGCGTCTGGGTGAATTTGACGTGTTGATTGGGATTAACCTGTTAAGGGA
AGGATTGGATTTACCGGAAGTTTCCCTGGTGGCGATTTTGGATGCCGACAAAGAAGGATTTTTGCGTTCGGAGCGTTCTT
TGATCCAAACCATCGGACGGGCTGCGCGGAATGCCCACGGAGAAGTGGTGATGTATGCGGACAAGATCACCGACTCCATG
AAAAAAGCGATCGATGAAACAGAGCGCCGTCGGCAAATTCAAGCGGCCTACAATAAAAAACACGGAATTGTCCCCCAAAC
GATTCAAAAAGACGTGCGTGAAGTGATTGAGGCGACCAAAGTGGCGGAACAAACCGCTGAATATGTGACAGGAAAACAAA
CGAAGAAAATGAGCAAGTCTGAACGGAACAAGTTGATCCGCGACCTGGAAAAAGAAATGAAAGAAGCCGCCAAAGAGTTG
AATTTTGAACGTGCTGCCGAATTGCGGGATTTGATTATCGAATTGAAAGCGGAGGTTTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(11-139)

Ultra-violet resistance protein B (UvrB)

(551-593)

UvrB interaction domain (UvrB_inter)

(159-249)

UvrB/uvrC motif (UVR)

(624-657)

Helicase conserved C-terminal domain (Helicase_C)

(431-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

68.14

99.545

0.678
  uvrB Streptococcus pneumoniae R6

67.988

99.545

0.677
  uvrB Streptococcus pneumoniae D39

67.988

99.545

0.677