Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DYQ48_RS08605 | Genome accession | NZ_CP031607 |
| Coordinates | 2001542..2002066 (+) | Length | 174 a.a. |
| NCBI ID | WP_006448868.1 | Uniprot ID | A0A6V7EHJ3 |
| Organism | Xanthomonas hortorum strain VT106 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1996542..2007066
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DYQ48_RS08585 (DYQ48_08615) | - | 1996868..1997326 (+) | 459 | WP_006448872.1 | hypothetical protein | - |
| DYQ48_RS08590 (DYQ48_08620) | murL | 1997323..1998678 (+) | 1356 | WP_074057696.1 | UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase | - |
| DYQ48_RS08595 (DYQ48_08625) | murD | 1998659..2000068 (+) | 1410 | WP_074057695.1 | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase | - |
| DYQ48_RS08600 (DYQ48_08630) | - | 2000270..2001268 (-) | 999 | WP_074057694.1 | polyprenyl synthetase family protein | - |
| DYQ48_RS08605 (DYQ48_08635) | ssb | 2001542..2002066 (+) | 525 | WP_006448868.1 | single-stranded DNA-binding protein | Machinery gene |
| DYQ48_RS08610 (DYQ48_08640) | - | 2002377..2004575 (+) | 2199 | WP_074057693.1 | TonB-dependent receptor | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18785.72 Da Isoelectric Point: 5.3177
>NTDB_id=307888 DYQ48_RS08605 WP_006448868.1 2001542..2002066(+) (ssb) [Xanthomonas hortorum strain VT106]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYIEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQA
APPMDDFADDDIPF
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYIEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQA
APPMDDFADDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=307888 DYQ48_RS08605 WP_006448868.1 2001542..2002066(+) (ssb) [Xanthomonas hortorum strain VT106]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAAGGC
GAGTTGCGCTACGACAAATACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAAGGTGGCGGTGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAGCAGGCC
GCGCCGCCGATGGATGACTTTGCGGATGACGATATCCCGTTCTAA
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAAGGC
GAGTTGCGCTACGACAAATACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAAGGTGGCGGTGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAGCAGGCC
GCGCCGCCGATGGATGACTTTGCGGATGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
46.703 |
100 |
0.489 |
| ssb | Glaesserella parasuis strain SC1401 |
46.409 |
100 |
0.483 |
| ssb | Neisseria meningitidis MC58 |
44.633 |
100 |
0.454 |
| ssb | Neisseria gonorrhoeae MS11 |
44.633 |
100 |
0.454 |