Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   EYC09_RS05110 Genome accession   NZ_CP036399
Coordinates   1072463..1073473 (+) Length   336 a.a.
NCBI ID   WP_000664456.1    Uniprot ID   -
Organism   Helicobacter pylori strain 8A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1067463..1078473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC09_RS05085 - 1067651..1068973 (-) 1323 WP_188348570.1 M23 family metallopeptidase -
  EYC09_RS05090 - 1068983..1069921 (-) 939 WP_000911271.1 outer membrane beta-barrel protein -
  EYC09_RS05095 - 1069930..1070784 (-) 855 WP_001987480.1 outer membrane beta-barrel protein -
  EYC09_RS05100 - 1070774..1071496 (-) 723 WP_025447020.1 hypothetical protein -
  EYC09_RS05105 panB 1071650..1072462 (+) 813 WP_000062706.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  EYC09_RS05110 ruvB 1072463..1073473 (+) 1011 WP_000664456.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  EYC09_RS05115 tatB 1073541..1074017 (+) 477 WP_000467595.1 Sec-independent protein translocase protein TatB -
  EYC09_RS05120 tatC 1074010..1074768 (+) 759 WP_000461239.1 twin-arginine translocase subunit TatC -
  EYC09_RS05125 queA 1074772..1075809 (+) 1038 WP_000657404.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EYC09_RS05130 rsmG 1075806..1076342 (+) 537 WP_001068820.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  EYC09_RS05135 - 1076336..1076578 (+) 243 WP_000944423.1 PP0621 family protein -
  EYC09_RS05140 - 1076581..1076988 (+) 408 WP_000906125.1 hypothetical protein -
  EYC09_RS05150 - 1077120..1077722 (-) 603 WP_000291636.1 outer membrane protein -
  EYC09_RS05155 - 1078013..1078387 (+) 375 WP_000772153.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37334.33 Da        Isoelectric Point: 6.2615

>NTDB_id=307850 EYC09_RS05110 WP_000664456.1 1072463..1073473(+) (ruvB) [Helicobacter pylori strain 8A3]
MKERIVNLETLDFETSQEVSLHPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALKELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNSQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=307850 EYC09_RS05110 WP_000664456.1 1072463..1073473(+) (ruvB) [Helicobacter pylori strain 8A3]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCACCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCCAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGTTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATTGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAAGGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGGCGACCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACTCTCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

96.726

100

0.967
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.56

96.131

0.515
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

52.475

90.179

0.473

Multiple sequence alignment