Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RIdsm_RS13120 Genome accession   NZ_CP031598
Coordinates   2774336..2774830 (-) Length   164 a.a.
NCBI ID   WP_057815535.1    Uniprot ID   A0A0T5PB88
Organism   Roseovarius indicus strain DSM 26383     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2769336..2779830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIdsm_RS13095 - 2769966..2770249 (+) 284 Protein_2628 DUF1330 domain-containing protein -
  RIdsm_RS13100 (RIdsm_02642) - 2770272..2770559 (+) 288 WP_057815539.1 DUF1330 domain-containing protein -
  RIdsm_RS13105 (RIdsm_02643) - 2770906..2771172 (+) 267 WP_057815538.1 hypothetical protein -
  RIdsm_RS13110 (RIdsm_02644) typA 2771297..2773117 (-) 1821 WP_057815537.1 translational GTPase TypA -
  RIdsm_RS13115 (RIdsm_02645) - 2773148..2774095 (-) 948 WP_082647356.1 GNAT family N-acetyltransferase -
  RIdsm_RS30150 - 2774144..2774284 (+) 141 WP_160325842.1 hypothetical protein -
  RIdsm_RS13120 (RIdsm_02646) ssb 2774336..2774830 (-) 495 WP_057815535.1 single-stranded DNA-binding protein Machinery gene
  RIdsm_RS13125 (RIdsm_02647) - 2775029..2775613 (+) 585 WP_057815533.1 lytic transglycosylase domain-containing protein -
  RIdsm_RS13130 (RIdsm_02648) - 2775669..2777336 (-) 1668 WP_057815532.1 ABC transporter substrate-binding protein -
  RIdsm_RS13135 (RIdsm_02649) - 2777425..2778417 (-) 993 WP_082647368.1 AraC family transcriptional regulator -
  RIdsm_RS13140 (RIdsm_02650) miaA 2778525..2779406 (-) 882 WP_057815531.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17886.56 Da        Isoelectric Point: 5.3021

>NTDB_id=307768 RIdsm_RS13120 WP_057815535.1 2774336..2774830(-) (ssb) [Roseovarius indicus strain DSM 26383]
MAGSVNKVIIIGNLGRDPEVRTFQNGGKVCNLRVATSEQWKDRNTGERRERTEWHSVAIFQEGLVRVCEQYLRKGSKVYL
EGKLQTRKWQDQSGQDRYSTEVVLQGFDGTLVMLDGRDGGGGSQGGNYGGGGSDYGSGYDSGPSQGGQPSSPGPSRDYDD
EIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=307768 RIdsm_RS13120 WP_057815535.1 2774336..2774830(-) (ssb) [Roseovarius indicus strain DSM 26383]
ATGGCCGGATCGGTCAACAAGGTAATCATTATCGGCAACCTGGGCCGCGACCCCGAGGTGCGCACGTTCCAGAACGGCGG
CAAGGTGTGCAACCTGCGCGTGGCGACTTCGGAGCAGTGGAAAGACCGCAACACCGGCGAGCGCCGCGAGCGGACGGAAT
GGCACAGCGTGGCGATCTTCCAGGAAGGTCTTGTACGGGTGTGCGAGCAATATCTGCGCAAGGGCTCGAAGGTCTACCTG
GAAGGCAAGCTGCAGACACGCAAATGGCAGGACCAGTCCGGCCAGGACCGGTATTCGACCGAGGTTGTCCTGCAAGGGTT
CGACGGCACGCTGGTGATGCTTGACGGTCGCGATGGCGGCGGTGGCAGCCAGGGCGGCAATTACGGTGGCGGCGGCAGCG
ATTACGGGAGCGGCTATGACAGCGGCCCGTCACAGGGGGGGCAGCCTTCGTCGCCCGGCCCGTCGCGCGATTACGACGAC
GAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T5PB88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.454

100

0.573
  ssb Vibrio cholerae strain A1552

52.023

100

0.549
  ssb Neisseria meningitidis MC58

41.989

100

0.463
  ssb Neisseria gonorrhoeae MS11

41.436

100

0.457

Multiple sequence alignment