Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | EYC16_RS04110 | Genome accession | NZ_CP036392 |
| Coordinates | 873194..873745 (-) | Length | 183 a.a. |
| NCBI ID | WP_000635144.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 48C8 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 868194..878745
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EYC16_RS04095 | ruvC | 870388..870861 (-) | 474 | WP_001221171.1 | crossover junction endodeoxyribonuclease RuvC | - |
| EYC16_RS04100 | - | 870992..871717 (+) | 726 | WP_000646773.1 | NYN domain-containing protein | - |
| EYC16_RS04105 | - | 872237..873096 (-) | 860 | Protein_798 | DUF3519 domain-containing protein | - |
| EYC16_RS04110 | ruvA | 873194..873745 (-) | 552 | WP_000635144.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| EYC16_RS04115 | - | 873770..875614 (-) | 1845 | WP_000051010.1 | FapA family protein | - |
| EYC16_RS04120 | murJ | 875707..877167 (+) | 1461 | WP_188348567.1 | murein biosynthesis integral membrane protein MurJ | - |
| EYC16_RS04125 | cysS | 877168..878565 (+) | 1398 | WP_000471329.1 | cysteine--tRNA ligase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20148.73 Da Isoelectric Point: 9.4311
>NTDB_id=307575 EYC16_RS04110 WP_000635144.1 873194..873745(-) (ruvA) [Helicobacter pylori strain 48C8]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS
Nucleotide
Download Length: 552 bp
>NTDB_id=307575 EYC16_RS04110 WP_000635144.1 873194..873745(-) (ruvA) [Helicobacter pylori strain 48C8]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTGGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTGGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
94.536 |
100 |
0.945 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
32.836 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |