Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   L3107_RS13690 Genome accession   NZ_CP031538
Coordinates   1110188..1110700 (-) Length   170 a.a.
NCBI ID   WP_228764428.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 3107     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1105188..1115700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3107_RS05745 (L3107_1115) - 1106350..1107303 (+) 954 WP_032940546.1 PhoH family protein -
  L3107_RS05750 (L3107_1116) - 1107373..1107867 (+) 495 WP_011676092.1 NUDIX hydrolase -
  L3107_RS05755 (L3107_1117) ybeY 1107958..1108446 (+) 489 WP_021165233.1 rRNA maturation RNase YbeY -
  L3107_RS05760 (L3107_1118) - 1108430..1108885 (+) 456 WP_011676094.1 diacylglycerol kinase -
  L3107_RS05765 (L3107_1119) - 1108902..1109480 (+) 579 WP_081146242.1 nucleotidyltransferase family protein -
  L3107_RS05770 (L3107_1120) comFC 1109538..1110188 (-) 651 WP_064305105.1 ComF family protein Machinery gene
  L3107_RS13690 (L3107_1121) comFA 1110188..1110700 (-) 513 WP_228764428.1 helicase-related protein Machinery gene
  L3107_RS13695 (L3107_1122) comFA 1110697..1111482 (-) 786 WP_021214114.1 DEAD/DEAH box helicase family protein Machinery gene
  L3107_RS05780 (L3107_1123) - 1111539..1112174 (+) 636 WP_011676097.1 YigZ family protein -
  L3107_RS05790 (L3107_1124) istA 1112392..1113615 (+) 1224 WP_003331415.1 IS21-like element IS712 family transposase -
  L3107_RS05795 (L3107_1125) istB 1113627..1114385 (+) 759 WP_015081777.1 IS21-like element IS712 family helper ATPase IstB -
  L3107_RS05800 (L3107_1126) - 1114468..1114884 (+) 417 WP_021165237.1 VanZ family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19647.11 Da        Isoelectric Point: 10.8525

>NTDB_id=307385 L3107_RS13690 WP_228764428.1 1110188..1110700(-) (comFA) [Lactococcus cremoris strain 3107]
MKLNDFFYHAAFTVILWSFQCFFWKKRFYKKFIEQRKTGFPLLIFVAEIDFGQDFAKNLQEKFPKEKMAFVASTTKSKKT
IVEAFRKKQVSILITTSILERGVTFSSIDVFVINSEHPNFTKSALIQMAGRVGRDSKRPTGLVSFFHSGKSLAMCQAQKE
IKKMNRLGGF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=307385 L3107_RS13690 WP_228764428.1 1110188..1110700(-) (comFA) [Lactococcus cremoris strain 3107]
ATGAAATTAAACGACTTTTTTTACCACGCCGCTTTCACGGTCATCCTTTGGTCATTCCAATGTTTTTTTTGGAAAAAAAG
ATTTTATAAAAAATTCATTGAGCAAAGAAAGACTGGTTTCCCACTTCTAATTTTCGTTGCCGAAATCGACTTTGGTCAAG
ACTTTGCCAAAAATTTACAAGAAAAATTTCCAAAAGAAAAAATGGCTTTTGTCGCTTCAACAACTAAAAGCAAAAAAACG
ATTGTCGAAGCTTTTCGCAAGAAACAAGTTTCGATTTTAATTACGACTTCTATTCTTGAACGAGGCGTAACTTTTTCTTC
GATTGATGTTTTTGTCATTAATAGCGAACACCCTAATTTCACAAAATCTGCCCTCATTCAAATGGCCGGACGAGTGGGAC
GCGACTCTAAACGTCCAACAGGTTTAGTTAGTTTTTTTCACTCTGGAAAATCTTTAGCCATGTGTCAAGCTCAGAAAGAA
ATTAAAAAAATGAACCGACTCGGAGGTTTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(29-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

98.658

87.647

0.865
  comFA/cflA Streptococcus pneumoniae Rx1

49.686

93.529

0.465
  comFA/cflA Streptococcus pneumoniae D39

49.686

93.529

0.465
  comFA/cflA Streptococcus pneumoniae R6

49.686

93.529

0.465
  comFA/cflA Streptococcus pneumoniae TIGR4

49.686

93.529

0.465
  comFA/cflA Streptococcus mitis NCTC 12261

52.113

83.529

0.435
  comFA/cflA Streptococcus mitis SK321

52.113

83.529

0.435

Multiple sequence alignment