Detailed information NTG0307386

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: L3107_RS13695
• Genome accession: NZ_CP031538
• Coordinates: 1110697..1111482 (-)
• Length: 261 a.a.
• NCBI ID: WP_021214114.1
• Uniprot ID: -
• Organism: Lactococcus cremoris strain 3107
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1105697..1116482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3107_RS05745 (L3107_1115)	-	1106350..1107303 (+)	954	WP_032940546.1	PhoH family protein	-
L3107_RS05750 (L3107_1116)	-	1107373..1107867 (+)	495	WP_011676092.1	NUDIX hydrolase	-
L3107_RS05755 (L3107_1117)	ybeY	1107958..1108446 (+)	489	WP_021165233.1	rRNA maturation RNase YbeY	-
L3107_RS05760 (L3107_1118)	-	1108430..1108885 (+)	456	WP_011676094.1	diacylglycerol kinase	-
L3107_RS05765 (L3107_1119)	-	1108902..1109480 (+)	579	WP_081146242.1	nucleotidyltransferase family protein	-
L3107_RS05770 (L3107_1120)	comFC	1109538..1110188 (-)	651	WP_064305105.1	ComF family protein	Machinery gene
L3107_RS13690 (L3107_1121)	comFA	1110188..1110700 (-)	513	WP_228764428.1	helicase-related protein	Machinery gene
L3107_RS13695 (L3107_1122)	comFA	1110697..1111482 (-)	786	WP_021214114.1	DEAD/DEAH box helicase family protein	Machinery gene
L3107_RS05780 (L3107_1123)	-	1111539..1112174 (+)	636	WP_011676097.1	YigZ family protein	-
L3107_RS05790 (L3107_1124)	istA	1112392..1113615 (+)	1224	WP_003331415.1	IS21-like element IS712 family transposase	-
L3107_RS05795 (L3107_1125)	istB	1113627..1114385 (+)	759	WP_015081777.1	IS21-like element IS712 family helper ATPase IstB	-
L3107_RS05800 (L3107_1126)	-	1114468..1114884 (+)	417	WP_021165237.1	VanZ family protein	-
L3107_RS05805 (L3107_1127)	-	1114950..1115969 (+)	1020	WP_021165238.1	DUF475 domain-containing protein	-

Sequence

Protein

• Length: 261 a.a.
• Molecular weight: 29919.55 Da
• Isoelectric Point: 7.8588

>NTDB_id=307386 L3107_RS13695 WP_021214114.1 1110697..1111482(-) (comFA) [Lactococcus cremoris strain 3107]
MNLILENLLGRLLLEKDISAFYNFTDQVNNENKLIKICAMTSVNANKVRCNRCGTIHIKTNVKLPIGAFFCPTCLELGRV
RSDEYFYHLPQQDFSEKTYLRWTGKLTENQEKISNALCQQITNNQKRLVQAVTGAGKTEMIYQLIEQILSHGGSVGLASP
RIDVCIELHQRLSRDFTCQIPLLYHEGDSYFRSPLVVMTSHQLLRFKEAFDLLIIDEVDAFPFRDNDMLYFALENAKKIN
GNLLYLTATSTDKLDKQIKKA

Nucleotide

• Length: 786 bp

>NTDB_id=307386 L3107_RS13695 WP_021214114.1 1110697..1111482(-) (comFA) [Lactococcus cremoris strain 3107]
ATGAACTTAATTTTAGAAAATCTCCTTGGGCGTCTTTTACTAGAAAAAGATATTTCAGCTTTTTATAATTTTACTGACCA
AGTTAACAATGAAAACAAATTAATTAAAATTTGTGCAATGACATCTGTCAATGCTAATAAAGTAAGATGTAATCGATGTG
GCACGATTCATATAAAAACCAATGTTAAACTTCCGATTGGTGCTTTTTTCTGTCCAACATGTCTTGAACTTGGTCGTGTC
CGCTCAGATGAATATTTCTATCATCTCCCTCAACAAGACTTTTCAGAAAAAACTTATTTACGTTGGACAGGAAAATTAAC
AGAAAATCAAGAAAAAATTTCTAACGCTCTCTGTCAGCAAATTACTAATAATCAAAAACGACTTGTTCAAGCCGTTACTG
GTGCTGGTAAAACAGAAATGATATATCAGCTTATTGAACAAATTCTTAGCCATGGGGGTTCGGTCGGTTTAGCCAGCCCA
AGAATTGATGTATGCATTGAGCTTCATCAACGTTTATCACGTGATTTCACTTGTCAAATTCCCCTTTTGTATCATGAGGG
AGATTCTTATTTTCGTTCGCCTTTGGTCGTTATGACCAGTCACCAACTTTTACGTTTCAAAGAGGCCTTTGATTTGCTTA
TCATCGATGAAGTCGATGCCTTTCCTTTTAGAGATAATGACATGCTTTATTTCGCTCTTGAAAATGCTAAAAAAATTAAT
GGAAACTTGCTCTACTTAACCGCTACATCTACTGACAAATTAGACAAACAGATAAAAAAAGCATGA

Domains

Predicted by InterProScan.

• Type III restriction enzyme, res subunit (ResIII) (105-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	97.308	99.617	0.969
comFA/cflA	Streptococcus mitis SK321	49.802	96.935	0.483
comFA/cflA	Streptococcus pneumoniae D39	49.012	96.935	0.475
comFA/cflA	Streptococcus pneumoniae Rx1	49.012	96.935	0.475
comFA/cflA	Streptococcus pneumoniae R6	49.012	96.935	0.475
comFA/cflA	Streptococcus pneumoniae TIGR4	49.012	96.935	0.475
comFA/cflA	Streptococcus mitis NCTC 12261	48.617	96.935	0.471
comFA	Bacillus subtilis subsp. subtilis str. 168	37.453	100	0.383