Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   L3107_RS13695 Genome accession   NZ_CP031538
Coordinates   1110697..1111482 (-) Length   261 a.a.
NCBI ID   WP_021214114.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 3107     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1112392..1114385 1110697..1111482 flank 910


Gene organization within MGE regions


Location: 1110697..1114385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3107_RS13695 (L3107_1122) comFA 1110697..1111482 (-) 786 WP_021214114.1 DEAD/DEAH box helicase family protein Machinery gene
  L3107_RS05780 (L3107_1123) - 1111539..1112174 (+) 636 WP_011676097.1 YigZ family protein -
  L3107_RS05790 (L3107_1124) istA 1112392..1113615 (+) 1224 WP_003331415.1 IS21-like element IS712 family transposase -
  L3107_RS05795 (L3107_1125) istB 1113627..1114385 (+) 759 WP_015081777.1 IS21-like element IS712 family helper ATPase IstB -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29919.55 Da        Isoelectric Point: 7.8588

>NTDB_id=307386 L3107_RS13695 WP_021214114.1 1110697..1111482(-) (comFA) [Lactococcus cremoris strain 3107]
MNLILENLLGRLLLEKDISAFYNFTDQVNNENKLIKICAMTSVNANKVRCNRCGTIHIKTNVKLPIGAFFCPTCLELGRV
RSDEYFYHLPQQDFSEKTYLRWTGKLTENQEKISNALCQQITNNQKRLVQAVTGAGKTEMIYQLIEQILSHGGSVGLASP
RIDVCIELHQRLSRDFTCQIPLLYHEGDSYFRSPLVVMTSHQLLRFKEAFDLLIIDEVDAFPFRDNDMLYFALENAKKIN
GNLLYLTATSTDKLDKQIKKA

Nucleotide


Download         Length: 786 bp        

>NTDB_id=307386 L3107_RS13695 WP_021214114.1 1110697..1111482(-) (comFA) [Lactococcus cremoris strain 3107]
ATGAACTTAATTTTAGAAAATCTCCTTGGGCGTCTTTTACTAGAAAAAGATATTTCAGCTTTTTATAATTTTACTGACCA
AGTTAACAATGAAAACAAATTAATTAAAATTTGTGCAATGACATCTGTCAATGCTAATAAAGTAAGATGTAATCGATGTG
GCACGATTCATATAAAAACCAATGTTAAACTTCCGATTGGTGCTTTTTTCTGTCCAACATGTCTTGAACTTGGTCGTGTC
CGCTCAGATGAATATTTCTATCATCTCCCTCAACAAGACTTTTCAGAAAAAACTTATTTACGTTGGACAGGAAAATTAAC
AGAAAATCAAGAAAAAATTTCTAACGCTCTCTGTCAGCAAATTACTAATAATCAAAAACGACTTGTTCAAGCCGTTACTG
GTGCTGGTAAAACAGAAATGATATATCAGCTTATTGAACAAATTCTTAGCCATGGGGGTTCGGTCGGTTTAGCCAGCCCA
AGAATTGATGTATGCATTGAGCTTCATCAACGTTTATCACGTGATTTCACTTGTCAAATTCCCCTTTTGTATCATGAGGG
AGATTCTTATTTTCGTTCGCCTTTGGTCGTTATGACCAGTCACCAACTTTTACGTTTCAAAGAGGCCTTTGATTTGCTTA
TCATCGATGAAGTCGATGCCTTTCCTTTTAGAGATAATGACATGCTTTATTTCGCTCTTGAAAATGCTAAAAAAATTAAT
GGAAACTTGCTCTACTTAACCGCTACATCTACTGACAAATTAGACAAACAGATAAAAAAAGCATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(105-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

97.308

99.617

0.969
  comFA/cflA Streptococcus mitis SK321

49.802

96.935

0.483
  comFA/cflA Streptococcus pneumoniae D39

49.012

96.935

0.475
  comFA/cflA Streptococcus pneumoniae Rx1

49.012

96.935

0.475
  comFA/cflA Streptococcus pneumoniae R6

49.012

96.935

0.475
  comFA/cflA Streptococcus pneumoniae TIGR4

49.012

96.935

0.475
  comFA/cflA Streptococcus mitis NCTC 12261

48.617

96.935

0.471
  comFA Bacillus subtilis subsp. subtilis str. 168

37.453

100

0.383

Multiple sequence alignment