Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | L3107_RS11805 | Genome accession | NZ_CP031538 |
| Coordinates | 2287783..2288283 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain 3107 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2282783..2293283
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3107_RS11780 (L3107_2296) | gnd | 2283908..2284813 (-) | 906 | WP_031286156.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| L3107_RS11785 (L3107_2297) | - | 2285182..2286030 (+) | 849 | WP_011677238.1 | MurR/RpiR family transcriptional regulator | - |
| L3107_RS11790 (L3107_2298) | - | 2286069..2286377 (+) | 309 | WP_011836103.1 | DUF960 domain-containing protein | - |
| L3107_RS11795 (L3107_2299) | - | 2286450..2287235 (-) | 786 | WP_021164832.1 | metallophosphoesterase | - |
| L3107_RS11800 (L3107_2300) | rpsR | 2287366..2287611 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| L3107_RS11805 (L3107_2301) | ssb | 2287783..2288283 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| L3107_RS11810 (L3107_2302) | rpsF | 2288313..2288606 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| L3107_RS11815 (L3107_2303) | - | 2288800..2289654 (-) | 855 | WP_021164831.1 | undecaprenyl-diphosphate phosphatase | - |
| L3107_RS11820 (L3107_2304) | - | 2290176..2291642 (+) | 1467 | WP_021164830.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=307383 L3107_RS11805 WP_011677241.1 2287783..2288283(-) (ssb) [Lactococcus cremoris strain 3107]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=307383 L3107_RS11805 WP_011677241.1 2287783..2288283(-) (ssb) [Lactococcus cremoris strain 3107]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |