Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   L3107_RS08685 Genome accession   NZ_CP031538
Coordinates   1704957..1705940 (-) Length   327 a.a.
NCBI ID   WP_021165609.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 3107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1699957..1710940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3107_RS08670 (L3107_1693) - 1701309..1702235 (-) 927 WP_021165607.1 peptidyl-prolyl cis-trans isomerase -
  L3107_RS08675 (L3107_1694) - 1702391..1703074 (-) 684 WP_011676723.1 O-methyltransferase -
  L3107_RS08680 (L3107_1695) pepF 1703077..1704882 (-) 1806 WP_021165608.1 oligoendopeptidase F Regulator
  L3107_RS08685 (L3107_1696) coiA 1704957..1705940 (-) 984 WP_021165609.1 competence protein CoiA family protein Machinery gene
  L3107_RS08690 (L3107_1697) - 1706015..1707100 (-) 1086 WP_014572240.1 YdcF family protein -
  L3107_RS08695 (L3107_1698) - 1707254..1707841 (-) 588 WP_014572239.1 alpha/beta hydrolase -
  L3107_RS13970 - 1707880..1708101 (-) 222 WP_250638073.1 alpha/beta hydrolase -
  L3107_RS08700 (L3107_1699) - 1708310..1709731 (-) 1422 WP_011676727.1 NCS2 family permease -
  L3107_RS08705 (L3107_1700) - 1710038..1710874 (+) 837 WP_011676728.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39064.82 Da        Isoelectric Point: 9.6841

>NTDB_id=307360 L3107_RS08685 WP_021165609.1 1704957..1705940(-) (coiA) [Lactococcus cremoris strain 3107]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQYLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
CMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=307360 L3107_RS08685 WP_021165609.1 1704957..1705940(-) (coiA) [Lactococcus cremoris strain 3107]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGTATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGTATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

96.636

100

0.966
  coiA Streptococcus mitis NCTC 12261

43.827

99.083

0.434
  coiA Streptococcus pneumoniae TIGR4

42.593

99.083

0.422
  coiA Streptococcus pneumoniae Rx1

42.593

99.083

0.422
  coiA Streptococcus pneumoniae D39

42.593

99.083

0.422
  coiA Streptococcus pneumoniae R6

42.593

99.083

0.422

Multiple sequence alignment