Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DWV07_RS16475 Genome accession   NZ_CP031515
Coordinates   3717515..3718063 (+) Length   182 a.a.
NCBI ID   WP_168366419.1    Uniprot ID   -
Organism   Dickeya zeae strain EC2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3718269..3719389 3717515..3718063 flank 206


Gene organization within MGE regions


Location: 3717515..3719389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWV07_RS16475 (DWV07_16690) ssb 3717515..3718063 (+) 549 WP_168366419.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19524.57 Da        Isoelectric Point: 5.2440

>NTDB_id=307274 DWV07_RS16475 WP_168366419.1 3717515..3718063(+) (ssb) [Dickeya zeae strain EC2]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNMGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=307274 DWV07_RS16475 WP_168366419.1 3717515..3718063(+) (ssb) [Dickeya zeae strain EC2]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAAAGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACTGGCGGCGGCGCACCTGCTGGTGGCAACATGGGCGGCAATATGGGTGGTG
GTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGTCAATCCCGT
CCGCAGCAAAGCGCACCGATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.194

100

0.758
  ssb Glaesserella parasuis strain SC1401

55.319

100

0.571
  ssb Neisseria meningitidis MC58

45.503

100

0.473
  ssb Neisseria gonorrhoeae MS11

45.946

100

0.467

Multiple sequence alignment