Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SDEG_RS11475 Genome accession   NC_012891
Coordinates   1614407..1615072 (-) Length   221 a.a.
NCBI ID   WP_012767419.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609407..1620072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS08205 (SDEG_1680) - 1612630..1613649 (-) 1020 Protein_1577 IS30 family transposase -
  SDEG_RS08210 (SDEG_1681) raiA 1613779..1614327 (-) 549 WP_003061817.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SDEG_RS11475 (SDEG_1682) comFC/cflB 1614407..1615072 (-) 666 WP_012767419.1 ComF family protein Machinery gene
  SDEG_RS08220 (SDEG_1683) comFA/cflA 1615044..1616369 (-) 1326 WP_003059901.1 DEAD/DEAH box helicase Machinery gene
  SDEG_RS08225 (SDEG_1684) - 1616425..1617063 (+) 639 WP_003062333.1 YigZ family protein -
  SDEG_RS08230 (SDEG_1685) cysK 1617167..1618102 (+) 936 WP_012767420.1 cysteine synthase A -
  SDEG_RS08235 (SDEG_1686) - 1618255..1618614 (-) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  SDEG_RS08240 (SDEG_1687) - 1618614..1620014 (-) 1401 WP_041789112.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25364.39 Da        Isoelectric Point: 8.7003

>NTDB_id=30726 SDEG_RS11475 WP_012767419.1 1614407..1615072(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=30726 SDEG_RS11475 WP_012767419.1 1614407..1615072(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403

Multiple sequence alignment