Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SDEG_RS10135 Genome accession   NC_012891
Coordinates   2026622..2027215 (-) Length   197 a.a.
NCBI ID   WP_003058778.1    Uniprot ID   A0ABU0A6N1
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2021622..2032215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS10105 (SDEG_2082) - 2021975..2022244 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  SDEG_RS10110 (SDEG_2083) spx 2022356..2022754 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  SDEG_RS10115 (SDEG_2084) recA 2023048..2024184 (-) 1137 WP_003058758.1 recombinase RecA Machinery gene
  SDEG_RS10120 (SDEG_2085) cinA 2024289..2025560 (-) 1272 WP_003058772.1 competence/damage-inducible protein A Machinery gene
  SDEG_RS10125 (SDEG_2086) - 2025684..2026037 (-) 354 WP_003058738.1 VOC family protein -
  SDEG_RS10130 (SDEG_2087) - 2026040..2026612 (-) 573 WP_003058799.1 DNA-3-methyladenine glycosylase I -
  SDEG_RS10135 (SDEG_2088) ruvA 2026622..2027215 (-) 594 WP_003058778.1 Holliday junction branch migration protein RuvA Machinery gene
  SDEG_RS10140 (SDEG_2089) - 2027217..2028437 (-) 1221 WP_003058727.1 MDR family MFS transporter -
  SDEG_RS10145 (SDEG_2090) hexB 2028448..2030430 (-) 1983 WP_012767642.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21741.99 Da        Isoelectric Point: 5.7322

>NTDB_id=30719 SDEG_RS10135 WP_003058778.1 2026622..2027215(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAKPSTSSNNDQLDEAIEALL
ALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=30719 SDEG_RS10135 WP_003058778.1 2026622..2027215(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCAAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACTTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACCAGTAAAGCAAAACCGTCTACCTCCTCAAACAATGACCAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAACAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(150-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

68.02

100

0.68
  ruvA Streptococcus pneumoniae R6

68.02

100

0.68
  ruvA Streptococcus pneumoniae D39

68.02

100

0.68
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406

Multiple sequence alignment