Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | DXG80_RS05530 | Genome accession | NZ_CP031500 |
| Coordinates | 1085382..1086602 (+) | Length | 406 a.a. |
| NCBI ID | WP_010888498.1 | Uniprot ID | Q9RTA2 |
| Organism | Deinococcus radiodurans strain R1 dM1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1080382..1091602
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXG80_RS05505 (DXG80_05505) | - | 1081873..1082292 (-) | 420 | WP_010888492.1 | organic hydroperoxide resistance protein | - |
| DXG80_RS05510 (DXG80_05510) | - | 1082398..1083150 (+) | 753 | WP_010888493.1 | TSUP family transporter | - |
| DXG80_RS05515 (DXG80_05515) | - | 1083188..1083970 (-) | 783 | WP_027479797.1 | DUF4388 domain-containing protein | - |
| DXG80_RS05520 (DXG80_05520) | scpB | 1084074..1084622 (-) | 549 | WP_010888496.1 | SMC-Scp complex subunit ScpB | - |
| DXG80_RS05525 (DXG80_05525) | - | 1084619..1085311 (-) | 693 | WP_010888497.1 | L-threonylcarbamoyladenylate synthase | - |
| DXG80_RS05530 (DXG80_05530) | pilC | 1085382..1086602 (+) | 1221 | WP_010888498.1 | type II secretion system F family protein | Machinery gene |
| DXG80_RS05535 (DXG80_05535) | - | 1086654..1087007 (-) | 354 | WP_010888499.1 | DUF423 domain-containing protein | - |
| DXG80_RS05540 (DXG80_05540) | mraZ | 1087286..1087714 (+) | 429 | WP_010888500.1 | division/cell wall cluster transcriptional repressor MraZ | - |
| DXG80_RS05545 (DXG80_05545) | rsmH | 1087711..1088649 (+) | 939 | WP_010888501.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| DXG80_RS05550 (DXG80_05550) | - | 1088650..1089012 (+) | 363 | WP_010888502.1 | hypothetical protein | - |
| DXG80_RS05555 (DXG80_05555) | - | 1089003..1090349 (+) | 1347 | WP_027479798.1 | peptidoglycan D,D-transpeptidase FtsI family protein | - |
| DXG80_RS05560 (DXG80_05560) | - | 1090356..1091360 (-) | 1005 | WP_010888504.1 | 4Fe-4S binding protein | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44323.84 Da Isoelectric Point: 7.3174
>NTDB_id=307158 DXG80_RS05530 WP_010888498.1 1085382..1086602(+) (pilC) [Deinococcus radiodurans strain R1 dM1]
MPVYEYRARDRGGQTLKSQMEADSEAQVRDALRARNLMILEIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQHPKIFGRLFINLVRAGETSGTLDTVLERIADFQEKQ
LALQGKIKSALTYPTVVLVFALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVIVLAYR
WYYRTPQGRHAIDDFKLRLPVFGNLIQKSAISSFARTFGLLVSSGVNIIESLEITKGTADNAIVEETIENAKNVVISGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ
MPVYEYRARDRGGQTLKSQMEADSEAQVRDALRARNLMILEIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQHPKIFGRLFINLVRAGETSGTLDTVLERIADFQEKQ
LALQGKIKSALTYPTVVLVFALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVIVLAYR
WYYRTPQGRHAIDDFKLRLPVFGNLIQKSAISSFARTFGLLVSSGVNIIESLEITKGTADNAIVEETIENAKNVVISGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=307158 DXG80_RS05530 WP_010888498.1 1085382..1086602(+) (pilC) [Deinococcus radiodurans strain R1 dM1]
ATGCCGGTCTACGAATATCGCGCCCGGGACCGGGGGGGTCAGACCCTCAAATCCCAGATGGAGGCCGACTCCGAAGCCCA
GGTCCGCGACGCGCTGCGGGCCCGCAACCTGATGATTCTGGAAATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCAGGTCTCACCGACCGCCCGCCGGGACTCAAGCAGGTGGCGGTCTTCAGCAAGCAGCTCGCTACCCTGATCAAT
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGCCAGCTCGACAACAAGACCTTCGAGGCCGTGATCAAAAA
GGTGCGCGGCGAGGTCGAGTCGGGCCAGCCGCTCAGCGAGGCACTGCAACAGCACCCCAAGATCTTCGGGCGGCTGTTCA
TCAACCTCGTCCGCGCCGGAGAAACGAGCGGCACGCTCGACACGGTGCTCGAGCGTATCGCCGACTTTCAGGAAAAGCAG
CTCGCGTTGCAGGGCAAGATCAAGAGCGCGCTGACCTACCCCACGGTGGTGCTGGTCTTCGCCCTAGGGATCACCTACTT
CCTACTGACCACCGTGGTGCCGCAGTTCGCCGGCATCCTGACGCAGCTCAATGCGCCGCTCCCTTTCATCACGCGCATGC
TGATGGCGGTCTCCAACTTCTTGCAGCACTCGGGCCTGCTGCTGCTCGCCATCATCGCTGTGATCGTGCTCGCTTACCGC
TGGTACTACCGCACGCCCCAGGGCCGTCACGCCATTGACGACTTTAAGTTGCGCTTGCCGGTGTTCGGCAACCTGATCCA
GAAAAGCGCCATCAGTTCGTTTGCCCGCACCTTTGGCCTGCTCGTCAGCAGCGGGGTCAACATTATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAATGCGATCGTCGAAGAAACCATCGAGAACGCTAAGAACGTGGTGATCTCGGGGGACCAG
ATGAGTTCAAGTCTGGCGACCAGCAAAGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGCGAGGAAACCGGGTC
GCTCGACAACATGCTCAACAAGGTTGCCGACTTCTATGACCGCGAGGTGGACGAGGCCGTCGAGAGTCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTGGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGAACGCTCAGCCAGTAA
ATGCCGGTCTACGAATATCGCGCCCGGGACCGGGGGGGTCAGACCCTCAAATCCCAGATGGAGGCCGACTCCGAAGCCCA
GGTCCGCGACGCGCTGCGGGCCCGCAACCTGATGATTCTGGAAATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCAGGTCTCACCGACCGCCCGCCGGGACTCAAGCAGGTGGCGGTCTTCAGCAAGCAGCTCGCTACCCTGATCAAT
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGCCAGCTCGACAACAAGACCTTCGAGGCCGTGATCAAAAA
GGTGCGCGGCGAGGTCGAGTCGGGCCAGCCGCTCAGCGAGGCACTGCAACAGCACCCCAAGATCTTCGGGCGGCTGTTCA
TCAACCTCGTCCGCGCCGGAGAAACGAGCGGCACGCTCGACACGGTGCTCGAGCGTATCGCCGACTTTCAGGAAAAGCAG
CTCGCGTTGCAGGGCAAGATCAAGAGCGCGCTGACCTACCCCACGGTGGTGCTGGTCTTCGCCCTAGGGATCACCTACTT
CCTACTGACCACCGTGGTGCCGCAGTTCGCCGGCATCCTGACGCAGCTCAATGCGCCGCTCCCTTTCATCACGCGCATGC
TGATGGCGGTCTCCAACTTCTTGCAGCACTCGGGCCTGCTGCTGCTCGCCATCATCGCTGTGATCGTGCTCGCTTACCGC
TGGTACTACCGCACGCCCCAGGGCCGTCACGCCATTGACGACTTTAAGTTGCGCTTGCCGGTGTTCGGCAACCTGATCCA
GAAAAGCGCCATCAGTTCGTTTGCCCGCACCTTTGGCCTGCTCGTCAGCAGCGGGGTCAACATTATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAATGCGATCGTCGAAGAAACCATCGAGAACGCTAAGAACGTGGTGATCTCGGGGGACCAG
ATGAGTTCAAGTCTGGCGACCAGCAAAGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGCGAGGAAACCGGGTC
GCTCGACAACATGCTCAACAAGGTTGCCGACTTCTATGACCGCGAGGTGGACGAGGCCGTCGAGAGTCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTGGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGAACGCTCAGCCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
60.099 |
100 |
0.601 |