Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DXX82_RS07235 Genome accession   NZ_CP031477
Coordinates   1475657..1476334 (-) Length   225 a.a.
NCBI ID   WP_049367123.1    Uniprot ID   A0AAQ3FIP0
Organism   Haemophilus parainfluenzae strain M27794     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470657..1481334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS07205 mreC 1471531..1472595 (+) 1065 WP_005695499.1 rod shape-determining protein MreC -
  DXX82_RS07210 mreD 1472595..1473083 (+) 489 WP_005695501.1 rod shape-determining protein MreD -
  DXX82_RS07215 rhlB 1473124..1474383 (-) 1260 WP_115912279.1 ATP-dependent RNA helicase RhlB -
  DXX82_RS07220 - 1474473..1474754 (-) 282 WP_032822874.1 GNAT family N-acetyltransferase -
  DXX82_RS07225 yacG 1474751..1474957 (-) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  DXX82_RS07230 coaE 1474947..1475570 (-) 624 WP_005695506.1 dephospho-CoA kinase -
  DXX82_RS07235 pilD 1475657..1476334 (-) 678 WP_049367123.1 A24 family peptidase Machinery gene
  DXX82_RS07240 pilC 1476331..1477554 (-) 1224 WP_049376124.1 type II secretion system F family protein Machinery gene
  DXX82_RS07245 pilB 1477563..1478942 (-) 1380 WP_115912282.1 GspE/PulE family protein Machinery gene
  DXX82_RS07250 pilA 1478949..1479392 (-) 444 WP_005697917.1 prepilin peptidase-dependent pilin Machinery gene
  DXX82_RS07255 ampD 1479535..1480098 (+) 564 WP_005695512.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DXX82_RS07265 rppH 1480583..1481176 (+) 594 WP_049376123.1 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26278.13 Da        Isoelectric Point: 6.3162

>NTDB_id=307138 DXX82_RS07235 WP_049367123.1 1475657..1476334(-) (pilD) [Haemophilus parainfluenzae strain M27794]
MMTFAFFLLGGLAGIFAWFYIDRFIPNLQQEIYQNYVELYPENRPIFHSEKALIQSQKCGHIFRYFLGFGLCFAVLDYFL
QDELFTLWLAITLSLIFVISWLDWHYQLISPTPCLFLFFLGLFGAHQEFSILTLSQSLESAVSFFSVFYIIYHLSKWFYK
KEALGRGDYWLALGIGTYLTIEYLPLFLFIACLLGIIVYWISRKPVLPFAPFLCISLIVTSAITL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=307138 DXX82_RS07235 WP_049367123.1 1475657..1476334(-) (pilD) [Haemophilus parainfluenzae strain M27794]
ATGATGACATTCGCCTTTTTCTTATTGGGTGGTTTAGCGGGCATCTTTGCTTGGTTTTATATTGATCGTTTTATTCCTAA
CCTTCAACAAGAAATTTATCAGAACTATGTCGAACTTTATCCCGAAAACAGGCCTATTTTCCATAGCGAAAAAGCATTGA
TTCAATCTCAAAAGTGTGGTCATATTTTTCGTTATTTTTTAGGATTCGGACTCTGTTTTGCTGTACTCGATTATTTTCTT
CAGGATGAATTGTTTACTTTATGGCTCGCGATTACGCTTAGTCTCATCTTTGTTATCAGTTGGCTAGACTGGCATTATCA
ACTGATTTCACCAACACCTTGCCTATTTTTATTTTTCCTGGGGCTATTCGGCGCACATCAAGAATTTTCAATTCTGACGC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCAGTGTTTTTTATATCATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCGTTAGGTCGTGGCGATTATTGGCTCGCTTTGGGAATCGGCACTTATCTCACCATCGAATACTTACCACTTTT
CTTATTCATTGCCTGTCTATTAGGCATAATAGTCTATTGGATTTCTCGTAAACCTGTTTTACCTTTTGCGCCCTTTCTTT
GCATATCGTTAATCGTCACCAGTGCAATAACCTTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

54.299

98.222

0.533
  pilD Haemophilus influenzae 86-028NP

53.394

98.222

0.524

Multiple sequence alignment