Detailed information NTG0306980

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: BRN52_RS18875
• Genome accession: NZ_CP031463
• Coordinates: 3885470..3886528 (-)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae pv. oryzae strain PX086
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3880470..3891528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BRN52_RS18850 (BRN52_18855)	-	3880682..3881480 (+)	799	WP_094187728.1	IS5 family transposase	-
BRN52_RS18855 (BRN52_18860)	-	3881551..3883500 (-)	1950	WP_011407796.1	type IV pilus secretin PilQ family protein	-
BRN52_RS18860 (BRN52_18865)	-	3883520..3884053 (-)	534	WP_011257996.1	pilus assembly protein PilP	-
BRN52_RS18865 (BRN52_18870)	-	3884050..3884715 (-)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
BRN52_RS18870 (BRN52_18875)	-	3884712..3885470 (-)	759	WP_044757059.1	PilN domain-containing protein	-
BRN52_RS18875 (BRN52_18880)	comM	3885470..3886528 (-)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
BRN52_RS18880 (BRN52_18885)	-	3886744..3889173 (+)	2430	WP_011257992.1	penicillin-binding protein 1A	-
BRN52_RS18885 (BRN52_18890)	-	3889241..3890197 (-)	957	WP_041182719.1	IS30-like element IS1112b family transposase	-
BRN52_RS18890 (BRN52_18895)	-	3890542..3891192 (+)	651	WP_011407794.1	hypothetical protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=306980 BRN52_RS18875 WP_011407795.1 3885470..3886528(-) (comM) [Xanthomonas oryzae pv. oryzae strain PX086]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=306980 BRN52_RS18875 WP_011407795.1 3885470..3886528(-) (comM) [Xanthomonas oryzae pv. oryzae strain PX086]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477