Detailed information NTG0306840

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: BRM60_RS05955
• Genome accession: NZ_CP031456
• Coordinates: 1156467..1157525 (+)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae pv. oryzae strain HuN37
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1151467..1162525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BRM60_RS05945 (BRM60_05945)	-	1152862..1153512 (-)	651	WP_011407794.1	hypothetical protein	-
BRM60_RS05950 (BRM60_05950)	-	1153822..1156251 (-)	2430	WP_011257992.1	penicillin-binding protein 1A	-
BRM60_RS05955 (BRM60_05955)	comM	1156467..1157525 (+)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
BRM60_RS05960 (BRM60_05960)	-	1157525..1158283 (+)	759	WP_011257994.1	PilN domain-containing protein	-
BRM60_RS05965 (BRM60_05965)	-	1158280..1158945 (+)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
BRM60_RS05970 (BRM60_05970)	-	1158942..1159475 (+)	534	WP_011257996.1	pilus assembly protein PilP	-
BRM60_RS05975 (BRM60_05975)	-	1159495..1161444 (+)	1950	WP_011407796.1	type IV pilus secretin PilQ family protein	-
BRM60_RS05980 (BRM60_05980)	-	1162042..1162043 (-)	2	WP_094187763.1	IS5 family transposase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=306840 BRM60_RS05955 WP_011407795.1 1156467..1157525(+) (comM) [Xanthomonas oryzae pv. oryzae strain HuN37]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=306840 BRM60_RS05955 WP_011407795.1 1156467..1157525(+) (comM) [Xanthomonas oryzae pv. oryzae strain HuN37]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477