Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DYB08_RS08930 Genome accession   NZ_CP031444
Coordinates   1840206..1840787 (-) Length   193 a.a.
NCBI ID   WP_001215082.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MDR-UNC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1838661..1839320 1840206..1840787 flank 886


Gene organization within MGE regions


Location: 1838661..1840787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB08_RS08915 (DYB08_08915) - 1838661..1839320 (-) 660 WP_000782406.1 IS1595-like element ISAba36 family transposase -
  DYB08_RS08920 (DYB08_08920) - 1839354..1839845 (+) 492 Protein_1721 AzlC family ABC transporter permease -
  DYB08_RS08925 (DYB08_08925) - 1839842..1840165 (+) 324 WP_000082712.1 AzlD domain-containing protein -
  DYB08_RS08930 (DYB08_08930) ssb 1840206..1840787 (-) 582 WP_001215082.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20965.80 Da        Isoelectric Point: 6.4822

>NTDB_id=306749 DYB08_RS08930 WP_001215082.1 1840206..1840787(-) (ssb) [Acinetobacter baumannii strain MDR-UNC]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNTGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=306749 DYB08_RS08930 WP_001215082.1 1840206..1840787(-) (ssb) [Acinetobacter baumannii strain MDR-UNC]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACACTGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTTGCCCCTAAAGCACCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.485

100

0.539
  ssb Vibrio cholerae strain A1552

44.221

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394

Multiple sequence alignment