Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SDEG_RS04355 Genome accession   NC_012891
Coordinates   867688..868368 (+) Length   226 a.a.
NCBI ID   WP_003054017.1    Uniprot ID   A0ABU0ABG7
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 862688..873368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS04335 (SDEG_0874) - 862988..864520 (+) 1533 WP_041788967.1 ClC family H(+)/Cl(-) exchange transporter -
  SDEG_RS04340 (SDEG_0875) - 864579..865502 (-) 924 WP_012766871.1 helix-turn-helix domain-containing protein -
  SDEG_RS04345 (SDEG_0876) - 865722..866336 (+) 615 WP_012766872.1 SGNH/GDSL hydrolase family protein -
  SDEG_RS04350 (SDEG_0877) - 866513..867640 (+) 1128 WP_012766873.1 AI-2E family transporter -
  SDEG_RS04355 (SDEG_0878) radC 867688..868368 (+) 681 WP_003054017.1 RadC family protein Machinery gene
  SDEG_RS04360 (SDEG_0879) - 868370..869065 (-) 696 WP_003054040.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SDEG_RS04365 (SDEG_0880) - 869074..869718 (-) 645 WP_003054034.1 redox-sensing transcriptional repressor Rex -
  SDEG_RS04370 (SDEG_0881) - 869896..870108 (-) 213 WP_003062564.1 DUF4649 family protein -
  SDEG_RS04375 (SDEG_0882) - 870176..870523 (-) 348 WP_003054003.1 DUF1831 domain-containing protein -
  SDEG_RS04380 (SDEG_0883) - 870513..871640 (-) 1128 WP_012766874.1 cysteine desulfurase family protein -
  SDEG_RS04385 (SDEG_0884) - 871637..872617 (-) 981 WP_012766875.1 ribose-phosphate diphosphokinase -
  SDEG_RS04390 (SDEG_0885) - 872746..873327 (-) 582 WP_012766876.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25681.95 Da        Isoelectric Point: 7.3708

>NTDB_id=30668 SDEG_RS04355 WP_003054017.1 867688..868368(+) (radC) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MYSIKCDDIKLMPRERLMRMGAEALSNQELLAILLRTGNKEKHVLELSSYLLSHLESLADFKKLSLQELQTLAGIGKVKA
IEIKAMIELAARIQATEQTLSERILSSVQIAEKMMAVLGDKKQEHLVVLYLDSQNRVIEEKTIFIGTVRRSIAEPREILY
YACKNMATSLIVVHNHPSGSIDPSPNDYAFTEKIKRSCEDLGIICLDHIIVSYQSYYSFREKSSLF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=30668 SDEG_RS04355 WP_003054017.1 867688..868368(+) (radC) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGTATTCGATCAAATGCGATGATATAAAGCTGATGCCAAGAGAACGGTTAATGCGCATGGGGGCCGAAGCCTTAAGCAA
CCAAGAATTATTAGCCATTTTATTAAGGACAGGAAATAAAGAAAAACACGTTTTGGAATTATCTTCTTACCTGTTGTCAC
ATCTAGAAAGCTTAGCAGATTTTAAAAAGCTGTCTCTGCAAGAATTACAAACCTTAGCGGGAATCGGTAAAGTCAAAGCA
ATTGAAATCAAAGCAATGATTGAATTGGCTGCTAGGATTCAAGCAACTGAGCAAACACTGTCTGAGAGGATTCTTTCGAG
TGTTCAGATTGCAGAGAAGATGATGGCTGTTTTAGGCGATAAAAAGCAGGAGCATTTAGTGGTTCTGTATTTAGATAGTC
AAAATCGCGTGATTGAAGAGAAAACAATTTTTATAGGAACAGTCAGACGTTCGATCGCAGAACCTAGAGAAATTTTATAT
TACGCTTGTAAAAATATGGCAACAAGTCTTATTGTGGTTCACAATCACCCATCAGGAAGTATTGACCCGAGTCCTAATGA
TTACGCTTTTACTGAAAAAATAAAACGATCATGTGAAGACCTAGGCATCATTTGCCTGGATCACATCATCGTTAGTTATC
AATCTTATTATAGTTTCCGAGAAAAATCATCTCTTTTCTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

60.177

100

0.602
  radC Streptococcus pneumoniae R6

59.735

100

0.597
  radC Streptococcus pneumoniae D39

59.735

100

0.597
  radC Streptococcus gordonii str. Challis substr. CH1

57.08

100

0.571
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.318

96.018

0.416

Multiple sequence alignment