Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DW350_RS16940 Genome accession   NZ_CP031416
Coordinates   3569046..3569753 (-) Length   235 a.a.
NCBI ID   WP_115720072.1    Uniprot ID   -
Organism   Gallaecimonas mangrovi strain HK-28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3564046..3574753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW350_RS16920 - 3564162..3564374 (-) 213 WP_226911344.1 DUF1656 domain-containing protein -
  DW350_RS16925 - 3564361..3566526 (-) 2166 WP_115720069.1 FUSC family protein -
  DW350_RS16930 - 3566516..3567958 (-) 1443 WP_115720070.1 efflux transporter outer membrane subunit -
  DW350_RS16935 - 3568338..3568859 (-) 522 WP_152033002.1 hypothetical protein -
  DW350_RS16940 ssb 3569046..3569753 (-) 708 WP_115720072.1 single-stranded DNA-binding protein Machinery gene
  DW350_RS16945 - 3569771..3571051 (-) 1281 WP_336406958.1 MFS transporter -
  DW350_RS16950 uvrA 3571256..3574072 (+) 2817 WP_115720074.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24600.56 Da        Isoelectric Point: 5.2957

>NTDB_id=306617 DW350_RS16940 WP_115720072.1 3569046..3569753(-) (ssb) [Gallaecimonas mangrovi strain HK-28]
MASRGINKVIIVGNLGGDPEVRYMPNGNAVANFTVATSESWKDKQTGEQKELTEWHRMVIYGRLAEIAGEYLRKGSKVYL
EGRLQTRKWTGQDGQDRYTTEIIANEMQMLDSRQGGQQGGGFGGGAQQGGGFAGGQGQAGQQGAGQGGFGNAPQGGQSGG
FQQKPAQGGFSGGQQGGAPQGGNQGNFGNNNQGQGNNFAGGNRPQQGNYNAPNKPQQGGYGSDEPSMDFDDDIPF

Nucleotide


Download         Length: 708 bp        

>NTDB_id=306617 DW350_RS16940 WP_115720072.1 3569046..3569753(-) (ssb) [Gallaecimonas mangrovi strain HK-28]
ATGGCCAGTCGAGGCATTAACAAAGTCATTATTGTCGGCAACCTGGGTGGTGACCCGGAAGTACGTTACATGCCCAACGG
CAATGCCGTCGCAAATTTCACCGTCGCCACCAGTGAAAGCTGGAAAGACAAGCAAACCGGTGAGCAAAAAGAGCTAACCG
AGTGGCACCGCATGGTGATCTACGGCCGTTTGGCCGAGATAGCCGGCGAGTACCTGCGTAAAGGCTCCAAGGTGTACCTG
GAAGGGCGCCTGCAAACCCGCAAATGGACTGGCCAAGACGGCCAGGACCGTTACACCACCGAGATCATTGCTAACGAAAT
GCAGATGCTCGACAGCCGCCAAGGCGGCCAACAAGGTGGTGGTTTTGGCGGTGGTGCCCAGCAAGGCGGCGGTTTTGCCG
GTGGTCAAGGCCAAGCTGGCCAACAAGGCGCAGGCCAAGGTGGCTTCGGTAACGCACCGCAGGGTGGCCAAAGTGGCGGC
TTCCAGCAAAAGCCAGCGCAAGGCGGCTTTAGTGGTGGCCAGCAAGGTGGCGCTCCCCAGGGCGGCAATCAGGGCAACTT
TGGTAATAACAACCAAGGCCAGGGTAATAACTTTGCTGGTGGTAATCGCCCGCAGCAAGGCAATTACAACGCCCCGAACA
AACCGCAGCAAGGTGGTTACGGTAGCGACGAGCCGTCAATGGACTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.536

100

0.494
  ssb Glaesserella parasuis strain SC1401

49.145

99.574

0.489
  ssb Neisseria gonorrhoeae MS11

39.827

98.298

0.391
  ssb Neisseria meningitidis MC58

39.394

98.298

0.387

Multiple sequence alignment