Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DWG18_RS01755 Genome accession   NZ_CP031413
Coordinates   364081..365139 (+) Length   352 a.a.
NCBI ID   WP_115644840.1    Uniprot ID   A0A345ZHB0
Organism   Lysobacter sp. TY2-98     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359081..370139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWG18_RS01745 (DWG18_01745) - 360541..361200 (-) 660 WP_115644836.1 hypothetical protein -
  DWG18_RS01750 (DWG18_01750) - 361317..363836 (-) 2520 WP_115644838.1 penicillin-binding protein 1A -
  DWG18_RS01755 (DWG18_01755) comM 364081..365139 (+) 1059 WP_115644840.1 pilus assembly protein PilM Machinery gene
  DWG18_RS01760 (DWG18_01760) - 365139..365840 (+) 702 WP_115644842.1 PilN domain-containing protein -
  DWG18_RS01765 (DWG18_01765) pilO 365837..366523 (+) 687 WP_115644844.1 type 4a pilus biogenesis protein PilO -
  DWG18_RS01770 (DWG18_01770) - 366525..367061 (+) 537 WP_115644846.1 pilus assembly protein PilP -
  DWG18_RS01775 (DWG18_01775) - 367081..369015 (+) 1935 WP_240318568.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37773.17 Da        Isoelectric Point: 4.5143

>NTDB_id=306562 DWG18_RS01755 WP_115644840.1 364081..365139(+) (comM) [Lysobacter sp. TY2-98]
MGVITKSQPALVGVDISSTAVKLLQLTRAGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIKRAVARSGTRAKGAAAA
VAGSAVITKVIPMPSDLDGDELEAQVELEAANYVPYPIDEVNLDFEVLGPMPNTPDTLQVLLAASRSENVEIRASALELG
GLTARVMDVESFAIENAFALLSEQLKTPRDGLVALVDSGATMTTLYVLRNGRTIYSREQVFGGKQLTDEVMRRYGLSYEE
AGQAKRQGGLPEGYQTEVLEPFKEAMVQQISRLLQFFYAGSEFNRVDQLVIAGGGASISGIDRMLEDQIGVPTMVANPLA
NMTLGPRVQPHALAQDAPSLMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=306562 DWG18_RS01755 WP_115644840.1 364081..365139(+) (comM) [Lysobacter sp. TY2-98]
GTGGGCGTGATCACGAAGAGCCAGCCGGCCTTGGTTGGCGTGGATATCAGCTCGACCGCCGTCAAGCTGTTGCAGCTCAC
CCGAGCCGGCAACCGCTACCGCGTCGAGCACTATGCGGTGGAACCGCTGCCGCCCAATGCCGTGGTGGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAAGCCATCAAGCGCGCCGTGGCCCGGTCGGGTACGCGCGCCAAGGGGGCTGCCGCGGCA
GTCGCCGGGTCGGCGGTCATCACCAAGGTCATTCCGATGCCGTCCGATCTGGACGGTGACGAGCTCGAGGCCCAGGTCGA
ACTGGAAGCGGCGAACTACGTGCCGTATCCGATCGACGAAGTGAACCTCGACTTCGAAGTCCTCGGCCCGATGCCCAACA
CGCCGGACACGCTCCAGGTGCTGCTGGCGGCGTCGCGCTCGGAGAACGTCGAGATCCGCGCCTCGGCGCTGGAACTCGGT
GGCCTGACGGCGCGGGTCATGGACGTCGAGAGCTTCGCGATCGAGAACGCCTTCGCGCTCCTCTCCGAGCAGCTGAAGAC
GCCGCGCGACGGTCTCGTCGCCCTCGTCGACTCCGGCGCCACCATGACCACGCTGTACGTGCTGCGGAATGGCCGCACGA
TCTACAGCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGTTATGGCCTCTCGTACGAGGAA
GCCGGCCAGGCCAAGCGCCAGGGCGGCCTCCCCGAGGGCTACCAGACGGAAGTGCTGGAGCCTTTCAAGGAGGCGATGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACCAGCTCGTCATCGCCGGCG
GTGGCGCCTCGATCTCCGGCATCGACCGGATGCTCGAGGACCAGATCGGCGTGCCGACGATGGTCGCCAACCCGCTCGCG
AACATGACGCTGGGGCCGCGCGTGCAGCCGCACGCCCTCGCGCAGGACGCGCCCTCGCTCATGATCGCCTGCGGGCTCGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345ZHB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.287

98.864

0.497
  pilM Acinetobacter baumannii D1279779

49.568

98.58

0.489
  comM Acinetobacter nosocomialis M2

49.568

98.58

0.489
  pilM Legionella pneumophila strain ERS1305867

44.186

97.727

0.432

Multiple sequence alignment