Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DLE02_RS18045 Genome accession   NZ_CP031383
Coordinates   3755243..3756061 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain LUH 6011     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3750243..3761061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLE02_RS18030 (DLE02_03567) pilE 3750460..3750885 (-) 426 WP_005130737.1 type IV pilin protein Machinery gene
  DLE02_RS18035 (DLE02_03568) pilY2 3750882..3751364 (-) 483 WP_001046413.1 type IV pilin protein Machinery gene
  DLE02_RS18040 (DLE02_03569) pilY1 3751377..3755231 (-) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  DLE02_RS18045 (DLE02_03570) pilX 3755243..3756061 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DLE02_RS18050 (DLE02_03571) pilW 3756058..3757059 (-) 1002 WP_236091516.1 PilW family protein Machinery gene
  DLE02_RS18055 (DLE02_03572) pilV 3757060..3757620 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  DLE02_RS18060 (DLE02_03573) fimU 3757614..3758087 (-) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DLE02_RS18065 (DLE02_03574) ispH 3758257..3759207 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DLE02_RS18070 (DLE02_03575) gmk 3759330..3759959 (+) 630 WP_000015937.1 guanylate kinase -
  DLE02_RS18075 (DLE02_03576) rpoZ 3760032..3760310 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DLE02_RS18080 - 3760349..3760479 (+) 131 Protein_3525 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=306507 DLE02_RS18045 WP_000149377.1 3755243..3756061(-) (pilX) [Acinetobacter baumannii strain LUH 6011]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=306507 DLE02_RS18045 WP_000149377.1 3755243..3756061(-) (pilX) [Acinetobacter baumannii strain LUH 6011]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment