Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   DLE02_RS18030 Genome accession   NZ_CP031383
Coordinates   3750460..3750885 (-) Length   141 a.a.
NCBI ID   WP_005130737.1    Uniprot ID   A0AAX0TXJ3
Organism   Acinetobacter baumannii strain LUH 6011     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3745460..3755885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLE02_RS18000 (DLE02_03561) - 3745989..3747023 (+) 1035 WP_046693070.1 lipase secretion chaperone -
  DLE02_RS18005 (DLE02_03562) - 3747138..3748079 (+) 942 WP_098713316.1 triacylglycerol lipase -
  DLE02_RS18010 (DLE02_03563) rplS 3748132..3748500 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  DLE02_RS18015 (DLE02_03564) trmD 3748708..3749448 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  DLE02_RS18020 (DLE02_03565) rimM 3749494..3750042 (-) 549 WP_005130741.1 ribosome maturation factor RimM -
  DLE02_RS18025 (DLE02_03566) rpsP 3750062..3750313 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  DLE02_RS18030 (DLE02_03567) pilE 3750460..3750885 (-) 426 WP_005130737.1 type IV pilin protein Machinery gene
  DLE02_RS18035 (DLE02_03568) pilY2 3750882..3751364 (-) 483 WP_001046413.1 type IV pilin protein Machinery gene
  DLE02_RS18040 (DLE02_03569) pilY1 3751377..3755231 (-) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15191.34 Da        Isoelectric Point: 7.1291

>NTDB_id=306504 DLE02_RS18030 WP_005130737.1 3750460..3750885(-) (pilE) [Acinetobacter baumannii strain LUH 6011]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLHKGHRTAVQSEMMNIAQTLESQKMVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=306504 DLE02_RS18030 WP_005130737.1 3750460..3750885(-) (pilE) [Acinetobacter baumannii strain LUH 6011]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCATAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.163

100

0.972
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511

Multiple sequence alignment