Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   DLE02_RS18050 Genome accession   NZ_CP031383
Coordinates   3756058..3757059 (-) Length   333 a.a.
NCBI ID   WP_236091516.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LUH 6011     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3751058..3762059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLE02_RS18040 (DLE02_03569) pilY1 3751377..3755231 (-) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  DLE02_RS18045 (DLE02_03570) pilX 3755243..3756061 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DLE02_RS18050 (DLE02_03571) pilW 3756058..3757059 (-) 1002 WP_236091516.1 PilW family protein Machinery gene
  DLE02_RS18055 (DLE02_03572) pilV 3757060..3757620 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  DLE02_RS18060 (DLE02_03573) fimU 3757614..3758087 (-) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DLE02_RS18065 (DLE02_03574) ispH 3758257..3759207 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DLE02_RS18070 (DLE02_03575) gmk 3759330..3759959 (+) 630 WP_000015937.1 guanylate kinase -
  DLE02_RS18075 (DLE02_03576) rpoZ 3760032..3760310 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DLE02_RS18080 - 3760349..3760479 (+) 131 Protein_3525 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35842.53 Da        Isoelectric Point: 6.2442

>NTDB_id=306508 DLE02_RS18050 WP_236091516.1 3756058..3757059(-) (pilW) [Acinetobacter baumannii strain LUH 6011]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPRGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNYWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=306508 DLE02_RS18050 WP_236091516.1 3756058..3757059(-) (pilW) [Acinetobacter baumannii strain LUH 6011]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTCGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACTACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.799

100

0.988

Multiple sequence alignment