Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EW995_RS13765 Genome accession   NZ_CP035884
Coordinates   2871046..2871582 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain LSN03-016011/A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2866046..2876582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW995_RS13745 aphA 2866335..2867048 (+) 714 WP_001384961.1 acid phosphatase AphA -
  EW995_RS13750 yjbQ 2867159..2867575 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EW995_RS13755 yjbR 2867579..2867935 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EW995_RS13760 uvrA 2867970..2870792 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EW995_RS13765 ssb 2871046..2871582 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EW995_RS13770 yjcB 2871681..2871962 (-) 282 WP_001295689.1 YjcB family protein -
  EW995_RS13775 pdeC 2872392..2873978 (+) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  EW995_RS13780 soxS 2873981..2874304 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EW995_RS13785 soxR 2874390..2874854 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=306483 EW995_RS13765 WP_000168305.1 2871046..2871582(+) (ssb) [Escherichia coli strain LSN03-016011/A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=306483 EW995_RS13765 WP_000168305.1 2871046..2871582(+) (ssb) [Escherichia coli strain LSN03-016011/A]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489