Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EW995_RS11455 Genome accession   NZ_CP035884
Coordinates   2372892..2373560 (-) Length   222 a.a.
NCBI ID   WP_134737117.1    Uniprot ID   -
Organism   Escherichia coli strain LSN03-016011/A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2367892..2378560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW995_RS11425 rfaQ 2368070..2369128 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EW995_RS11430 waaA 2369541..2370818 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EW995_RS11435 coaD 2370826..2371305 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EW995_RS11440 mutM 2371344..2372153 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EW995_RS11445 rpmG 2372251..2372418 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EW995_RS11450 rpmB 2372439..2372675 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EW995_RS11455 radC 2372892..2373560 (-) 669 WP_134737117.1 DNA repair protein RadC Machinery gene
  EW995_RS11460 coaBC 2373732..2374952 (+) 1221 WP_000050158.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EW995_RS11465 dut 2374930..2375388 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EW995_RS11470 slmA 2375495..2376091 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EW995_RS11475 - 2376137..2377096 (-) 960 WP_000340183.1 reverse transcriptase family protein -
  EW995_RS11480 pyrE 2377394..2378035 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25272.38 Da        Isoelectric Point: 7.9748

>NTDB_id=306465 EW995_RS11455 WP_134737117.1 2372892..2373560(-) (radC) [Escherichia coli strain LSN03-016011/A]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDTQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=306465 EW995_RS11455 WP_134737117.1 2372892..2373560(-) (radC) [Escherichia coli strain LSN03-016011/A]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGTTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACACACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment