Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DMO12_RS17275 Genome accession   NZ_CP031380
Coordinates   3625678..3626319 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii ACICU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3620678..3631319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMO12_RS17255 (DMO12_10281) aroK 3621594..3622163 (-) 570 WP_000643712.1 shikimate kinase AroK -
  DMO12_RS17260 (DMO12_10284) pilQ 3622175..3624340 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  DMO12_RS17265 (DMO12_10287) pilP 3624403..3624930 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  DMO12_RS17270 (DMO12_10290) pilO 3624941..3625681 (-) 741 WP_000076098.1 type 4a pilus biogenesis protein PilO Machinery gene
  DMO12_RS17275 (DMO12_10293) pilN 3625678..3626319 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  DMO12_RS17280 (DMO12_10296) pilM 3626319..3627377 (-) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  DMO12_RS17285 (DMO12_10299) ponA 3627539..3630094 (+) 2556 WP_000736667.1 penicillin-binding protein PBP1a -
  DMO12_RS17290 (DMO12_10302) - 3630112..3630936 (-) 825 WP_002022249.1 putative RNA methyltransferase -
  DMO12_RS17295 (DMO12_10305) - 3630939..3631271 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=306466 DMO12_RS17275 WP_000201227.1 3625678..3626319(-) (pilN) [Acinetobacter baumannii ACICU]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=306466 DMO12_RS17275 WP_000201227.1 3625678..3626319(-) (pilN) [Acinetobacter baumannii ACICU]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTCCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment