Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   DMO12_RS17265 Genome accession   NZ_CP031380
Coordinates   3624403..3624930 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii ACICU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3619403..3629930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMO12_RS17245 (DMO12_10275) - 3619592..3620467 (-) 876 WP_000218808.1 hypothetical protein -
  DMO12_RS17250 (DMO12_10278) aroB 3620483..3621565 (-) 1083 WP_001193991.1 3-dehydroquinate synthase -
  DMO12_RS17255 (DMO12_10281) aroK 3621594..3622163 (-) 570 WP_000643712.1 shikimate kinase AroK -
  DMO12_RS17260 (DMO12_10284) pilQ 3622175..3624340 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  DMO12_RS17265 (DMO12_10287) pilP 3624403..3624930 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  DMO12_RS17270 (DMO12_10290) pilO 3624941..3625681 (-) 741 WP_000076098.1 type 4a pilus biogenesis protein PilO Machinery gene
  DMO12_RS17275 (DMO12_10293) pilN 3625678..3626319 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  DMO12_RS17280 (DMO12_10296) pilM 3626319..3627377 (-) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=306464 DMO12_RS17265 WP_000695065.1 3624403..3624930(-) (pilP) [Acinetobacter baumannii ACICU]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=306464 DMO12_RS17265 WP_000695065.1 3624403..3624930(-) (pilP) [Acinetobacter baumannii ACICU]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGCAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714

Multiple sequence alignment