Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DVR09_RS13870 Genome accession   NZ_CP031357
Coordinates   2812195..2812734 (-) Length   179 a.a.
NCBI ID   WP_115417546.1    Uniprot ID   A0A345YH53
Organism   Erythrobacter aureus strain YH-07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2807195..2817734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVR09_RS13840 (DVR09_13840) - 2808035..2808439 (-) 405 WP_115417540.1 ACT domain-containing protein -
  DVR09_RS13845 (DVR09_13845) hslU 2808439..2809740 (-) 1302 WP_115417541.1 ATP-dependent protease ATPase subunit HslU -
  DVR09_RS13850 (DVR09_13850) hslV 2809745..2810305 (-) 561 WP_115417984.1 ATP-dependent protease subunit HslV -
  DVR09_RS13855 (DVR09_13855) - 2810361..2810819 (-) 459 WP_115417543.1 outer membrane protein assembly factor BamE -
  DVR09_RS13860 (DVR09_13860) - 2810982..2811497 (+) 516 WP_115417985.1 ubiquinol-cytochrome C chaperone family protein -
  DVR09_RS13865 (DVR09_13865) - 2811494..2812024 (+) 531 WP_115417544.1 DUF177 domain-containing protein -
  DVR09_RS17400 - 2812028..2812180 (-) 153 WP_174223758.1 hypothetical protein -
  DVR09_RS13870 (DVR09_13870) ssb 2812195..2812734 (-) 540 WP_115417546.1 single-stranded DNA-binding protein Machinery gene
  DVR09_RS13875 (DVR09_13875) - 2812834..2814696 (-) 1863 WP_115417548.1 ferrous iron transporter B -
  DVR09_RS13880 (DVR09_13880) - 2814693..2814932 (-) 240 WP_115417550.1 FeoA family protein -
  DVR09_RS13885 (DVR09_13885) - 2814987..2815646 (-) 660 WP_115417551.1 COQ9 family protein -
  DVR09_RS13890 (DVR09_13890) - 2815650..2816243 (-) 594 WP_234041466.1 ankyrin repeat domain-containing protein -
  DVR09_RS13895 (DVR09_13895) - 2816340..2816924 (+) 585 WP_115417553.1 SCO family protein -
  DVR09_RS13900 (DVR09_13900) - 2816912..2817379 (+) 468 WP_115417554.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18409.84 Da        Isoelectric Point: 4.7789

>NTDB_id=306274 DVR09_RS13870 WP_115417546.1 2812195..2812734(-) (ssb) [Erythrobacter aureus strain YH-07]
MAGSLNKVMLIGNLGADPEIRSFQNGGKVCNLRLATTETWKDRNTGERQERTEWHTVAIFSEGLVSVAERFLRKGSKVYV
EGQLQTRKWQDQSGNDRYSTEVVLRGFNGTLTMLDGASGGGGGGGQRGGYGGGGGGGSYGGGSSGGGNDGDWNQGGGGSS
GGGSGGGSNYDDLDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=306274 DVR09_RS13870 WP_115417546.1 2812195..2812734(-) (ssb) [Erythrobacter aureus strain YH-07]
ATGGCCGGTAGCCTAAACAAAGTCATGCTCATCGGAAACCTGGGCGCCGACCCGGAAATCCGCAGCTTCCAGAATGGCGG
CAAAGTTTGCAATCTGCGGCTCGCCACCACCGAAACGTGGAAGGATCGCAATACGGGTGAACGCCAGGAACGGACCGAAT
GGCACACCGTGGCGATTTTCTCCGAAGGTCTGGTGAGCGTTGCCGAACGCTTTCTGCGCAAGGGGAGCAAGGTCTATGTC
GAAGGCCAATTGCAGACCCGCAAGTGGCAGGACCAGTCGGGTAACGATCGGTACTCGACCGAAGTTGTGCTGCGCGGTTT
CAACGGGACCCTGACCATGCTCGATGGTGCATCGGGCGGCGGCGGTGGCGGGGGCCAGCGCGGCGGCTATGGCGGCGGGG
GCGGAGGCGGCTCCTACGGCGGCGGTTCCTCCGGTGGCGGCAATGATGGCGACTGGAATCAGGGCGGCGGCGGATCGTCG
GGCGGCGGCTCGGGCGGTGGCTCGAATTATGACGACCTCGACGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345YH53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.143

97.765

0.48
  ssb Glaesserella parasuis strain SC1401

44.624

100

0.464
  ssb Neisseria meningitidis MC58

37.43

100

0.374
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.374

Multiple sequence alignment