Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EW998_RS23265 Genome accession   NZ_CP035874
Coordinates   4797591..4798127 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain B2C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4792591..4803127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW998_RS23245 soxR 4794319..4794783 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  EW998_RS23250 soxS 4794869..4795192 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EW998_RS23255 pdeC 4795195..4796781 (-) 1587 WP_000019532.1 c-di-GMP phosphodiesterase PdeC -
  EW998_RS23260 yjcB 4797211..4797492 (+) 282 WP_001295689.1 YjcB family protein -
  EW998_RS23265 ssb 4797591..4798127 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EW998_RS23270 uvrA 4798381..4801203 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EW998_RS23275 yjbR 4801238..4801594 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EW998_RS23280 yjbQ 4801598..4802014 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EW998_RS23285 aphA 4802125..4802838 (-) 714 WP_001355615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=306268 EW998_RS23265 WP_000168305.1 4797591..4798127(-) (ssb) [Escherichia coli strain B2C]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=306268 EW998_RS23265 WP_000168305.1 4797591..4798127(-) (ssb) [Escherichia coli strain B2C]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489