Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EW999_RS14305 Genome accession   NZ_CP035870
Coordinates   2873741..2874277 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain E2528-C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2868741..2879277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW999_RS14285 soxR 2870469..2870933 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  EW999_RS14290 soxS 2871019..2871342 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EW999_RS14295 pdeC 2871345..2872931 (-) 1587 Protein_2828 c-di-GMP phosphodiesterase PdeC -
  EW999_RS14300 yjcB 2873361..2873642 (+) 282 WP_001295689.1 YjcB family protein -
  EW999_RS14305 ssb 2873741..2874277 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EW999_RS14310 uvrA 2874531..2877353 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EW999_RS14315 yjbR 2877388..2877744 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EW999_RS14320 yjbQ 2877748..2878164 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EW999_RS14325 aphA 2878275..2878988 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=306137 EW999_RS14305 WP_000168305.1 2873741..2874277(-) (ssb) [Escherichia coli strain E2528-C1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=306137 EW999_RS14305 WP_000168305.1 2873741..2874277(-) (ssb) [Escherichia coli strain E2528-C1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489