Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV178_RS09250 Genome accession   NZ_CP031335
Coordinates   1564283..1564879 (+) Length   198 a.a.
NCBI ID   WP_115432352.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25964     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559283..1569879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV178_RS09220 - 1559577..1560164 (-) 588 WP_002220670.1 superoxide dismutase -
  DV178_RS09230 dnaB 1560327..1561733 (+) 1407 WP_002220671.1 replicative DNA helicase -
  DV178_RS09235 pilH 1562042..1562716 (+) 675 WP_063399723.1 GspH/FimT family pseudopilin Machinery gene
  DV178_RS09240 pilV 1562740..1563363 (+) 624 WP_063399721.1 type IV pilus modification protein PilV Machinery gene
  DV178_RS09245 pilJ 1563360..1564304 (+) 945 WP_063399719.1 PilW family protein Machinery gene
  DV178_RS09250 pilK 1564283..1564879 (+) 597 WP_115432352.1 pilus assembly PilX family protein Machinery gene
  DV178_RS09255 pilL 1564884..1565381 (+) 498 WP_002235687.1 PilX family type IV pilin Machinery gene
  DV178_RS09270 - 1567716..1568144 (-) 429 Protein_1508 AzlC family ABC transporter permease -
  DV178_RS09275 dut 1568287..1568739 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21885.84 Da        Isoelectric Point: 7.5811

>NTDB_id=306040 DV178_RS09250 WP_115432352.1 1564283..1564879(+) (pilK) [Neisseria meningitidis strain M25964]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKSLCTAVSVRTNNNGNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMKYQKGTRSVSKPPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=306040 DV178_RS09250 WP_115432352.1 1564283..1564879(+) (pilK) [Neisseria meningitidis strain M25964]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGTGAAAACTGTGAAAAAAGTCTGTGTACCGCAGTGAGTGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTA
CCGACCTGTGCATTGACAAGAAAGGGATGAAATATCAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.139

100

0.879

Multiple sequence alignment