Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   DV178_RS09255 Genome accession   NZ_CP031335
Coordinates   1564884..1565381 (+) Length   165 a.a.
NCBI ID   WP_002235687.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25964     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559884..1570381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV178_RS09230 dnaB 1560327..1561733 (+) 1407 WP_002220671.1 replicative DNA helicase -
  DV178_RS09235 pilH 1562042..1562716 (+) 675 WP_063399723.1 GspH/FimT family pseudopilin Machinery gene
  DV178_RS09240 pilV 1562740..1563363 (+) 624 WP_063399721.1 type IV pilus modification protein PilV Machinery gene
  DV178_RS09245 pilJ 1563360..1564304 (+) 945 WP_063399719.1 PilW family protein Machinery gene
  DV178_RS09250 pilK 1564283..1564879 (+) 597 WP_115432352.1 pilus assembly PilX family protein Machinery gene
  DV178_RS09255 pilL 1564884..1565381 (+) 498 WP_002235687.1 PilX family type IV pilin Machinery gene
  DV178_RS09270 - 1567716..1568144 (-) 429 Protein_1508 AzlC family ABC transporter permease -
  DV178_RS09275 dut 1568287..1568739 (+) 453 WP_002220679.1 dUTP diphosphatase -
  DV178_RS09280 dapC 1568815..1570002 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  DV178_RS14160 - 1570090..1570215 (+) 126 Protein_1511 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18297.17 Da        Isoelectric Point: 9.4425

>NTDB_id=306041 DV178_RS09255 WP_002235687.1 1564884..1565381(+) (pilL) [Neisseria meningitidis strain M25964]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQIILKNPQDSDDILNIKLTMFVSGYKM
NPKIAEKYSVSWEFVDAPKSRANRALKSRAYRLVGVPKAGTGYTLSVWVNSVGDGYKCRDAASAQAHLETLSADVGCEAF
SNRKK

Nucleotide


Download         Length: 498 bp        

>NTDB_id=306041 DV178_RS09255 WP_002235687.1 1564884..1565381(+) (pilL) [Neisseria meningitidis strain M25964]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGATTATTTTGAAAAATCCACAGGATAGTGATGATATCCTCAATATAAAACTGACAATGTTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAGTGTTTCGTGGGAATTTGTCGATGCGCCAAAATCAAGGGCAAACAGGGCGTTAAA
ATCAAGGGCATACAGGTTGGTCGGCGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGGTGAACAGCGTGGGCG
ACGGATACAAATGCCGTGATGCCGCTTCTGCCCAAGCCCATTTGGAGACTTTGTCCGCGGATGTCGGCTGTGAAGCCTTC
TCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

82.424

100

0.824
  pilX Neisseria meningitidis 8013

80

100

0.8

Multiple sequence alignment