Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DV178_RS09235 Genome accession   NZ_CP031335
Coordinates   1562042..1562716 (+) Length   224 a.a.
NCBI ID   WP_063399723.1    Uniprot ID   A0AAC9CPR4
Organism   Neisseria meningitidis strain M25964     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557042..1567716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV178_RS14155 - 1557755..1557862 (+) 108 Protein_1498 IS5/IS1182 family transposase -
  DV178_RS09210 - 1557907..1558239 (+) 333 WP_002213854.1 hypothetical protein -
  DV178_RS09215 - 1558570..1559079 (+) 510 WP_063399725.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DV178_RS09220 - 1559577..1560164 (-) 588 WP_002220670.1 superoxide dismutase -
  DV178_RS09230 dnaB 1560327..1561733 (+) 1407 WP_002220671.1 replicative DNA helicase -
  DV178_RS09235 pilH 1562042..1562716 (+) 675 WP_063399723.1 GspH/FimT family pseudopilin Machinery gene
  DV178_RS09240 pilV 1562740..1563363 (+) 624 WP_063399721.1 type IV pilus modification protein PilV Machinery gene
  DV178_RS09245 pilJ 1563360..1564304 (+) 945 WP_063399719.1 PilW family protein Machinery gene
  DV178_RS09250 pilK 1564283..1564879 (+) 597 WP_115432352.1 pilus assembly PilX family protein Machinery gene
  DV178_RS09255 pilL 1564884..1565381 (+) 498 WP_002235687.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25204.91 Da        Isoelectric Point: 10.1641

>NTDB_id=306037 DV178_RS09235 WP_063399723.1 1562042..1562716(+) (pilH) [Neisseria meningitidis strain M25964]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDGDAADVFLRRVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTKD
QHLTSKSSFFYSDGYIQIVLTDARAVLDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=306037 DV178_RS09235 WP_063399723.1 1562042..1562716(+) (pilH) [Neisseria meningitidis strain M25964]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCGGCGGATGTTTTCCTCCGCAGAGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAAGAC
CAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTT
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTGATC
GGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.302

95.982

0.857

Multiple sequence alignment