Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV179_RS02335 Genome accession   NZ_CP031331
Coordinates   385974..386570 (+) Length   198 a.a.
NCBI ID   WP_024465107.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26263     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380974..391570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV179_RS02305 - 381284..381871 (-) 588 WP_002220670.1 superoxide dismutase -
  DV179_RS02315 dnaB 382033..383439 (+) 1407 WP_002213843.1 replicative DNA helicase -
  DV179_RS02320 pilH 383748..384416 (+) 669 WP_024465109.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV179_RS02325 pilV 384446..385060 (+) 615 WP_024465108.1 type IV pilus modification protein PilV Machinery gene
  DV179_RS02330 pilJ 385057..385995 (+) 939 WP_002222655.1 PilW family protein Machinery gene
  DV179_RS02335 pilK 385974..386570 (+) 597 WP_024465107.1 pilus assembly protein Machinery gene
  DV179_RS02340 pilX 386575..387048 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  DV179_RS02365 - 388799..389224 (-) 426 Protein_394 AzlC family ABC transporter permease -
  DV179_RS02370 dut 389367..389819 (+) 453 WP_002220679.1 dUTP diphosphatase -
  DV179_RS02375 dapC 389895..391082 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21714.66 Da        Isoelectric Point: 7.5813

>NTDB_id=305869 DV179_RS02335 WP_024465107.1 385974..386570(+) (pilK) [Neisseria meningitidis strain M26263]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCAKGLCTAVNVRTNNTGNEEAFDNIVVQGNPTVEAVKRSCPAKSTGLCIDNKGMEYKKGTRSVSKMPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=305869 DV179_RS02335 WP_024465107.1 385974..386570(+) (pilK) [Neisseria meningitidis strain M26263]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGCAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAATCTA
CAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.614

100

0.904

Multiple sequence alignment