Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXE32_RS04240 Genome accession   NZ_CP035850
Coordinates   901067..901603 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TW10590     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 896067..906603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE32_RS04220 soxR 897795..898259 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  EXE32_RS04225 soxS 898345..898668 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EXE32_RS04230 pdeC 898671..900257 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  EXE32_RS04235 yjcB 900687..900968 (+) 282 WP_001295689.1 YjcB family protein -
  EXE32_RS04240 ssb 901067..901603 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EXE32_RS04245 uvrA 901857..904679 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EXE32_RS04250 yjbR 904714..905070 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EXE32_RS04255 yjbQ 905074..905490 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EXE32_RS04260 aphA 905601..906314 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=305787 EXE32_RS04240 WP_000168305.1 901067..901603(-) (ssb) [Escherichia coli strain TW10590]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=305787 EXE32_RS04240 WP_000168305.1 901067..901603(-) (ssb) [Escherichia coli strain TW10590]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489