Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXA01_RS11175 Genome accession   NZ_CP035846
Coordinates   2293094..2293630 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TW10598     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2288094..2298630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA01_RS11155 soxR 2289822..2290286 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  EXA01_RS11160 soxS 2290372..2290695 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EXA01_RS11165 pdeC 2290698..2292284 (-) 1587 WP_000019532.1 c-di-GMP phosphodiesterase PdeC -
  EXA01_RS11170 yjcB 2292714..2292995 (+) 282 WP_001295689.1 YjcB family protein -
  EXA01_RS11175 ssb 2293094..2293630 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EXA01_RS11180 uvrA 2293884..2296706 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EXA01_RS11185 yjbR 2296741..2297097 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EXA01_RS11190 yjbQ 2297101..2297517 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EXA01_RS11195 aphA 2297628..2298341 (-) 714 WP_001355615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=305718 EXA01_RS11175 WP_000168305.1 2293094..2293630(-) (ssb) [Escherichia coli strain TW10598]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=305718 EXA01_RS11175 WP_000168305.1 2293094..2293630(-) (ssb) [Escherichia coli strain TW10598]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489