Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXA02_RS09775 Genome accession   NZ_CP035841
Coordinates   1987037..1987573 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TW10722     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1982037..1992573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA02_RS09755 soxR 1983765..1984229 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  EXA02_RS09760 soxS 1984315..1984638 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EXA02_RS09765 pdeC 1984641..1986227 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  EXA02_RS09770 yjcB 1986657..1986938 (+) 282 WP_001295689.1 YjcB family protein -
  EXA02_RS09775 ssb 1987037..1987573 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EXA02_RS09780 uvrA 1987827..1990649 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EXA02_RS09785 yjbR 1990684..1991040 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EXA02_RS09790 yjbQ 1991044..1991460 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EXA02_RS09795 aphA 1991571..1992284 (-) 714 WP_001355871.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=305630 EXA02_RS09775 WP_000168305.1 1987037..1987573(-) (ssb) [Escherichia coli strain TW10722]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=305630 EXA02_RS09775 WP_000168305.1 1987037..1987573(-) (ssb) [Escherichia coli strain TW10722]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489