Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DWB95_RS11570 Genome accession   NZ_CP031280
Coordinates   2390584..2391099 (-) Length   171 a.a.
NCBI ID   WP_017637494.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain 3C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2385584..2396099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB95_RS11535 (DWB95_11555) - 2386340..2386720 (+) 381 WP_029056590.1 hypothetical protein -
  DWB95_RS11540 (DWB95_11560) - 2386796..2387374 (-) 579 WP_154874772.1 histidine phosphatase family protein -
  DWB95_RS11545 (DWB95_11565) - 2387397..2388026 (-) 630 WP_070451888.1 LysE family translocator -
  DWB95_RS11550 (DWB95_11570) - 2388713..2388964 (-) 252 WP_070451885.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  DWB95_RS11555 (DWB95_11575) - 2389209..2389451 (+) 243 WP_070451882.1 hypothetical protein -
  DWB95_RS11560 (DWB95_11580) - 2389524..2390045 (-) 522 WP_070451879.1 VOC family protein -
  DWB95_RS11565 (DWB95_11585) rpsR 2390298..2390540 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  DWB95_RS11570 (DWB95_11590) ssbA 2390584..2391099 (-) 516 WP_017637494.1 single-stranded DNA-binding protein Machinery gene
  DWB95_RS11575 (DWB95_11595) rpsF 2391121..2391417 (-) 297 WP_017637495.1 30S ribosomal protein S6 -
  DWB95_RS11580 (DWB95_11600) - 2391795..2392616 (+) 822 WP_070451877.1 GH25 family lysozyme -
  DWB95_RS11585 (DWB95_11605) - 2392681..2392872 (+) 192 WP_017637497.1 hypothetical protein -
  DWB95_RS11590 (DWB95_11610) ychF 2393005..2394102 (-) 1098 WP_017637498.1 redox-regulated ATPase YchF -
  DWB95_RS11595 (DWB95_11615) - 2394114..2394317 (-) 204 WP_017637499.1 DUF951 domain-containing protein -
  DWB95_RS11600 (DWB95_11620) - 2394338..2395216 (-) 879 WP_046467355.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18846.38 Da        Isoelectric Point: 4.7410

>NTDB_id=305437 DWB95_RS11570 WP_017637494.1 2390584..2391099(-) (ssbA) [Staphylococcus pasteuri strain 3C]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKSNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=305437 DWB95_RS11570 WP_017637494.1 2390584..2391099(-) (ssbA) [Staphylococcus pasteuri strain 3C]
ATGATAAATAGAGTTGTATTAGTAGGTCGTTTGACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTAACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAAAA
TTCACAAAACGGTGGTGGCCAACGTTCACAAAACAACGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCTAAATCTAATTCAAATCAATCAGATAACCCATTTGCAAATGCAAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

53.179

100

0.538
  ssb Glaesserella parasuis strain SC1401

34.392

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

65.497

0.374

Multiple sequence alignment