Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DWB94_RS10600 Genome accession   NZ_CP031277
Coordinates   2149195..2149707 (-) Length   170 a.a.
NCBI ID   WP_017175674.1    Uniprot ID   A0A4Q9WS61
Organism   Staphylococcus hominis strain 19A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2144195..2154707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB94_RS10570 (DWB94_10570) - 2145317..2145946 (+) 630 WP_017175678.1 NDxxF motif lipoprotein -
  DWB94_RS10575 (DWB94_10575) - 2146043..2146621 (-) 579 WP_017175677.1 histidine phosphatase family protein -
  DWB94_RS10580 (DWB94_10580) - 2146899..2147147 (-) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  DWB94_RS10585 (DWB94_10585) - 2147468..2147725 (+) 258 WP_017175676.1 helix-turn-helix transcriptional regulator -
  DWB94_RS10590 (DWB94_10590) - 2147784..2148728 (-) 945 WP_017175675.1 hypothetical protein -
  DWB94_RS10595 (DWB94_10595) rpsR 2148911..2149153 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  DWB94_RS10600 (DWB94_10600) ssbA 2149195..2149707 (-) 513 WP_017175674.1 single-stranded DNA-binding protein Machinery gene
  DWB94_RS10605 (DWB94_10605) rpsF 2149729..2150025 (-) 297 WP_017175673.1 30S ribosomal protein S6 -
  DWB94_RS10610 (DWB94_10610) - 2150273..2150464 (+) 192 WP_019834711.1 hypothetical protein -
  DWB94_RS10615 (DWB94_10615) ychF 2150534..2151631 (-) 1098 WP_019834710.1 redox-regulated ATPase YchF -
  DWB94_RS10620 (DWB94_10620) - 2151643..2151846 (-) 204 WP_002448008.1 DUF951 domain-containing protein -
  DWB94_RS10625 (DWB94_10625) - 2151867..2152745 (-) 879 WP_017175670.1 mechanosensitive ion channel family protein -
  DWB94_RS10630 (DWB94_10630) - 2152875..2153699 (-) 825 WP_017175669.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18727.23 Da        Isoelectric Point: 4.9265

>NTDB_id=305403 DWB94_RS10600 WP_017175674.1 2149195..2149707(-) (ssbA) [Staphylococcus hominis strain 19A]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRHQGNNDFQDYGQGFGGSQSGQNTSYNNNNRASNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=305403 DWB94_RS10600 WP_017175674.1 2149195..2149707(-) (ssbA) [Staphylococcus hominis strain 19A]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTCATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGATTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCGAATGGTCCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9WS61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

53.488

100

0.541
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.376
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment