Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DWB94_RS07280 Genome accession   NZ_CP031277
Coordinates   1469817..1470689 (-) Length   290 a.a.
NCBI ID   WP_145423799.1    Uniprot ID   -
Organism   Staphylococcus hominis strain 19A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1464817..1475689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB94_RS07265 (DWB94_07265) xerC 1465247..1466140 (-) 894 WP_017174598.1 tyrosine recombinase XerC -
  DWB94_RS07270 (DWB94_07270) trmFO 1466278..1467585 (-) 1308 WP_002455420.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DWB94_RS07275 (DWB94_07275) topA 1467609..1469678 (-) 2070 WP_017174596.1 type I DNA topoisomerase -
  DWB94_RS07280 (DWB94_07280) dprA 1469817..1470689 (-) 873 WP_145423799.1 DNA-processing protein DprA Machinery gene
  DWB94_RS07285 (DWB94_07285) sucD 1470948..1471853 (-) 906 WP_145423796.1 succinate--CoA ligase subunit alpha -
  DWB94_RS07290 (DWB94_07290) sucC 1471875..1473041 (-) 1167 WP_017174593.1 ADP-forming succinate--CoA ligase subunit beta -
  DWB94_RS07295 (DWB94_07295) - 1473168..1473935 (-) 768 WP_145423794.1 ribonuclease HII -
  DWB94_RS07300 (DWB94_07300) ylqF 1473919..1474803 (-) 885 WP_145423792.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33599.66 Da        Isoelectric Point: 9.1706

>NTDB_id=305396 DWB94_RS07280 WP_145423799.1 1469817..1470689(-) (dprA) [Staphylococcus hominis strain 19A]
MNNFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHDQFEIINEWESLYLKKKRFTQLKEISYDYIQTQLSRYQVNYVSSF
SSQYPSLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATNYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=305396 DWB94_RS07280 WP_145423799.1 1469817..1470689(-) (dprA) [Staphylococcus hominis strain 19A]
ATGAATAATTTTATTTTATTAAAAATGAGGTGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGATCAATTTGAAATAATCAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAAAAGAGATTTCTTACGATTATATTCAAACCCAACTTTCTAGATATCAAGTTAACTATGTTAGTTCATTT
TCTTCTCAATATCCTTCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACGTATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACAAATTATTCTAAGTGTGCACTAGATTATCTGTTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTTCCAACTATTGCAGTTCTAGGTTTTGGCCATTTAAATCATTATCCAAAGGAAACACGAAAGTTACGCAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTACTGCCTGGATCGATGTTTAATCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGCTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.979

99.655

0.538
  dprA Streptococcus mutans UA159

37.241

100

0.372
  dprA Lactococcus lactis subsp. cremoris KW2

36.897

100

0.369

Multiple sequence alignment