Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DWB98_RS12600 Genome accession   NZ_CP031275
Coordinates   2657975..2658502 (-) Length   175 a.a.
NCBI ID   WP_107539254.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2652975..2663502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB98_RS12600 (DWB98_12625) ssbA 2657975..2658502 (-) 528 WP_107539254.1 single-stranded DNA-binding protein Machinery gene
  DWB98_RS12605 (DWB98_12630) rpsF 2658521..2658826 (-) 306 WP_017723387.1 30S ribosomal protein S6 -
  DWB98_RS12610 (DWB98_12635) - 2659256..2660062 (+) 807 WP_042363430.1 GH25 family lysozyme -
  DWB98_RS12615 (DWB98_12640) ychF 2660212..2661309 (-) 1098 WP_029378814.1 redox-regulated ATPase YchF -
  DWB98_RS12620 (DWB98_12645) - 2661309..2661524 (-) 216 WP_029378813.1 DUF951 domain-containing protein -
  DWB98_RS12625 (DWB98_12650) - 2661546..2662430 (-) 885 WP_029378812.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19531.99 Da        Isoelectric Point: 4.9056

>NTDB_id=305369 DWB98_RS12600 WP_107539254.1 2657975..2658502(-) (ssbA) [Staphylococcus xylosus strain]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNNNNNNTSNNNQSDNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=305369 DWB98_RS12600 WP_107539254.1 2657975..2658502(-) (ssbA) [Staphylococcus xylosus strain]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGGCGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGCCAAGAAGGGAATAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAACAATAACAATAACAATAATAACAACAACAATACATCAAATAATAATCAATCAGATAACCCATTTGCA
AATGCAAACGGACCTATTGATATTAGTGATGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.068

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

56.983

100

0.583
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

62.857

0.371
  ssb Glaesserella parasuis strain SC1401

33.511

100

0.36

Multiple sequence alignment